Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119775944
Identifier: 119775944
GI number: 119775944
Start: 3350574
End: 3351191
Strand: Reverse
Name: 119775944
Synonym: Sama_2812
Alternate gene names: NA
Gene position: 3351191-3350574 (Counterclockwise)
Preceding gene: 119775945
Following gene: 119775943
Centisome position: 77.82
GC content: 56.96
Gene sequence:
>618_bases ATGAAATACCCGCTCAGTTTGCTGTTTGCCGCGTCACTGTCGGTGTCACCCTGGGTGGCCGCCGAAGTGTATGTTACCCC CTTTGCCGGTTACAGTTTTGCCGCCAGCAGTCTGGATGCCAACCGTGATGGGCTGGACACCAATGGCAGCGTCAGTGCCG AAGAGTCCTCCCATTACGGCATCATACTGGGCACCACCACCAATCATCCCGGCAATATGTACGTGCTTTACTCGTCCCAG AGTACCGACCTGATAGCGGGTGGCAACTTTTCAAACGAGCGAGTCACCTCCCTTAAACTCGACTATGCCCATGTGGGGGG TAGCCTGTATTTCCCCCGCGGGGATTTTCTGCCCTATGTCACCGCCTCCATGGGCTTGACCCAGATGCGGCCGGGGGACG ACTACAGCGATGAAACCCGCTTTTCGCTGGGGCTCGGGGTTGGCGCCGAGTATCGCCTTGGTGAGCGACTTGCCTTGGTG GCCGACATTCGTGCCTTCGCCACGTTTATTGACAGTGAAAACAGCCTCTTTTGCGATGCCAATAACTGTTTGTGGCAGGT GAACGCCGATTTGATGTGGCAGGGGCAGGCCAACGTCGGCGTCAGTTTCAGGTTCTAA
Upstream 100 bases:
>100_bases GAAATGATGGAACTCGCCAAGCGCAAGGCTCAGGATATCCAGGCCGCCTATGAGGCGGTCAAGGCCGCGCGAAAGATGCG CTGATTTCAGGGAGAGTGCC
Downstream 100 bases:
>100_bases TCATGACAGCAATTTGTGTATTGGATGGCTTCACCCTTAACCCCGGCGATCTGGATTGGTCGCCCCTGGCTGATATTGGC CCCTTCGACGTCCATGACAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MKYPLSLLFAASLSVSPWVAAEVYVTPFAGYSFAASSLDANRDGLDTNGSVSAEESSHYGIILGTTTNHPGNMYVLYSSQ STDLIAGGNFSNERVTSLKLDYAHVGGSLYFPRGDFLPYVTASMGLTQMRPGDDYSDETRFSLGLGVGAEYRLGERLALV ADIRAFATFIDSENSLFCDANNCLWQVNADLMWQGQANVGVSFRF
Sequences:
>Translated_205_residues MKYPLSLLFAASLSVSPWVAAEVYVTPFAGYSFAASSLDANRDGLDTNGSVSAEESSHYGIILGTTTNHPGNMYVLYSSQ STDLIAGGNFSNERVTSLKLDYAHVGGSLYFPRGDFLPYVTASMGLTQMRPGDDYSDETRFSLGLGVGAEYRLGERLALV ADIRAFATFIDSENSLFCDANNCLWQVNADLMWQGQANVGVSFRF >Mature_205_residues MKYPLSLLFAASLSVSPWVAAEVYVTPFAGYSFAASSLDANRDGLDTNGSVSAEESSHYGIILGTTTNHPGNMYVLYSSQ STDLIAGGNFSNERVTSLKLDYAHVGGSLYFPRGDFLPYVTASMGLTQMRPGDDYSDETRFSLGLGVGAEYRLGERLALV ADIRAFATFIDSENSLFCDANNCLWQVNADLMWQGQANVGVSFRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22242; Mature: 22242
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYPLSLLFAASLSVSPWVAAEVYVTPFAGYSFAASSLDANRDGLDTNGSVSAEESSHYG CCCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCEE IILGTTTNHPGNMYVLYSSQSTDLIAGGNFSNERVTSLKLDYAHVGGSLYFPRGDFLPYV EEEECCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCCEE TASMGLTQMRPGDDYSDETRFSLGLGVGAEYRLGERLALVADIRAFATFIDSENSLFCDA HHHCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHEECCCCCEEEEC NNCLWQVNADLMWQGQANVGVSFRF CCEEEEECCCEEEECCCCCCEEEEC >Mature Secondary Structure MKYPLSLLFAASLSVSPWVAAEVYVTPFAGYSFAASSLDANRDGLDTNGSVSAEESSHYG CCCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCEE IILGTTTNHPGNMYVLYSSQSTDLIAGGNFSNERVTSLKLDYAHVGGSLYFPRGDFLPYV EEEECCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCCEE TASMGLTQMRPGDDYSDETRFSLGLGVGAEYRLGERLALVADIRAFATFIDSENSLFCDA HHHCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHEECCCCCEEEEC NNCLWQVNADLMWQGQANVGVSFRF CCEEEEECCCEEEECCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA