| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775915
Identifier: 119775915
GI number: 119775915
Start: 3325845
End: 3326768
Strand: Reverse
Name: 119775915
Synonym: Sama_2783
Alternate gene names: NA
Gene position: 3326768-3325845 (Counterclockwise)
Preceding gene: 119775917
Following gene: 119775914
Centisome position: 77.26
GC content: 56.93
Gene sequence:
>924_bases GTGAACAACTTACTGACTTACTTTAAAGGGCTCGCCATGGGCGCGGCCGACGTGGTACCCGGTGTTTCCGGCGGCACCAT TGCCTTTATCACCGGTATTCTGGACAAGCTGCTGGACAGCGTGCGTGCCATTAATCCCTCACTCATCAAAGTGATCCGTG AAGAGGGTGGAAAAGCAGCCTGGGCGCGTATCAACGGCACCTTTCTGGTGTGCCTGCTTGGCGGTATTCTCACCAGCATC TTCAGCCTCGCCAAGCTGATTTCGTACCTCCTGGCACATCACCCCATTCCGGTTTGGTCTTTCTTCTTTGGCCTGATTTT GGTGTCTGTGTGGCATATGCTGCGGCAGGTTAAGGGCTTCGATGCCGGGCGTATTGCGCTCTTTATCCTCGGGGCTGTGG TGGCCTGGGGGATTACGGTTCTCACCCCCACAGAAATACCCGCCACCTATCTTAACGTGTTCCTCGGCGGTGCCATTGCC ATTTGCGCCATGATTTTGCCGGGCATTTCCGGCAGCTTTATCCTGCTCTTGCTCGGCCTCTACCCTGCGGTGCTCGCTGC TGCCAAGGGCTTACAGCTGGACGTCCTTGCCTGTTTTGCGGCGGGTGCCGTTTGCGGCATCCTGAGTTTCAGCCACCTGC TGTCGATGCTGTTACGCAAATTTCACGACGCCACCATCTTCTTCCTCACCGGCTTGATGCTGGGCACCCTGGGTAAAATC TGGCCCTGGAAAGAAACCTTAAGCTGGCGCACCAACTCCCACGGCGAGCAGGTGCCTCTGGCGCAGCAAAACCTTACGCC CTGGGGATTCGAGCAGCTTACCGGTGAATCTTCCCAGCTGGGTTTTGCCATCGTCTGCGCCTTAGTGGGTATCGCTCTGG TGCTGATTATCGAGAAACTGGGCGAAGGTAAGCCGAGCCGCTGA
Upstream 100 bases:
>100_bases TAACACAAAGTTCATTTTCAGCCGCTGCCAAGCCGACATATAATCGGCGGCAACAATAAGGACAGTGTCGGCCAAGTGCC GGTATTTTTTGGGGAATTGG
Downstream 100 bases:
>100_bases TTTGGCTTCCGCGCACTGATTACGAATACTGAAAAGCCCGCTATTGCGGGCTTTTTGTTGGGGGCTTGCCGAATTATTGG AAGCGGCCTTTCTGCTGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAAWARINGTFLVCLLGGILTSI FSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGFDAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIA ICAMILPGISGSFILLLLGLYPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKLGEGKPSR
Sequences:
>Translated_307_residues MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAAWARINGTFLVCLLGGILTSI FSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGFDAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIA ICAMILPGISGSFILLLLGLYPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKLGEGKPSR >Mature_307_residues MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAAWARINGTFLVCLLGGILTSI FSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGFDAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIA ICAMILPGISGSFILLLLGLYPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKLGEGKPSR
Specific function: Unknown
COG id: COG2035
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32787; Mature: 32787
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAA CCHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE WARINGTFLVCLLGGILTSIFSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGF EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC DAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIAICAMILPGISGSFILLLLGL CCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH YPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKL CCCHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GEGKPSR CCCCCCC >Mature Secondary Structure MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAA CCHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE WARINGTFLVCLLGGILTSIFSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGF EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC DAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIAICAMILPGISGSFILLLLGL CCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH YPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKL CCCHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GEGKPSR CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA