Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775915

Identifier: 119775915

GI number: 119775915

Start: 3325845

End: 3326768

Strand: Reverse

Name: 119775915

Synonym: Sama_2783

Alternate gene names: NA

Gene position: 3326768-3325845 (Counterclockwise)

Preceding gene: 119775917

Following gene: 119775914

Centisome position: 77.26

GC content: 56.93

Gene sequence:

>924_bases
GTGAACAACTTACTGACTTACTTTAAAGGGCTCGCCATGGGCGCGGCCGACGTGGTACCCGGTGTTTCCGGCGGCACCAT
TGCCTTTATCACCGGTATTCTGGACAAGCTGCTGGACAGCGTGCGTGCCATTAATCCCTCACTCATCAAAGTGATCCGTG
AAGAGGGTGGAAAAGCAGCCTGGGCGCGTATCAACGGCACCTTTCTGGTGTGCCTGCTTGGCGGTATTCTCACCAGCATC
TTCAGCCTCGCCAAGCTGATTTCGTACCTCCTGGCACATCACCCCATTCCGGTTTGGTCTTTCTTCTTTGGCCTGATTTT
GGTGTCTGTGTGGCATATGCTGCGGCAGGTTAAGGGCTTCGATGCCGGGCGTATTGCGCTCTTTATCCTCGGGGCTGTGG
TGGCCTGGGGGATTACGGTTCTCACCCCCACAGAAATACCCGCCACCTATCTTAACGTGTTCCTCGGCGGTGCCATTGCC
ATTTGCGCCATGATTTTGCCGGGCATTTCCGGCAGCTTTATCCTGCTCTTGCTCGGCCTCTACCCTGCGGTGCTCGCTGC
TGCCAAGGGCTTACAGCTGGACGTCCTTGCCTGTTTTGCGGCGGGTGCCGTTTGCGGCATCCTGAGTTTCAGCCACCTGC
TGTCGATGCTGTTACGCAAATTTCACGACGCCACCATCTTCTTCCTCACCGGCTTGATGCTGGGCACCCTGGGTAAAATC
TGGCCCTGGAAAGAAACCTTAAGCTGGCGCACCAACTCCCACGGCGAGCAGGTGCCTCTGGCGCAGCAAAACCTTACGCC
CTGGGGATTCGAGCAGCTTACCGGTGAATCTTCCCAGCTGGGTTTTGCCATCGTCTGCGCCTTAGTGGGTATCGCTCTGG
TGCTGATTATCGAGAAACTGGGCGAAGGTAAGCCGAGCCGCTGA

Upstream 100 bases:

>100_bases
TAACACAAAGTTCATTTTCAGCCGCTGCCAAGCCGACATATAATCGGCGGCAACAATAAGGACAGTGTCGGCCAAGTGCC
GGTATTTTTTGGGGAATTGG

Downstream 100 bases:

>100_bases
TTTGGCTTCCGCGCACTGATTACGAATACTGAAAAGCCCGCTATTGCGGGCTTTTTGTTGGGGGCTTGCCGAATTATTGG
AAGCGGCCTTTCTGCTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAAWARINGTFLVCLLGGILTSI
FSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGFDAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIA
ICAMILPGISGSFILLLLGLYPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI
WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKLGEGKPSR

Sequences:

>Translated_307_residues
MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAAWARINGTFLVCLLGGILTSI
FSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGFDAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIA
ICAMILPGISGSFILLLLGLYPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI
WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKLGEGKPSR
>Mature_307_residues
MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAAWARINGTFLVCLLGGILTSI
FSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGFDAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIA
ICAMILPGISGSFILLLLGLYPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI
WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKLGEGKPSR

Specific function: Unknown

COG id: COG2035

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32787; Mature: 32787

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAA
CCHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
WARINGTFLVCLLGGILTSIFSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
DAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIAICAMILPGISGSFILLLLGL
CCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
YPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKL
CCCHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
GEGKPSR
CCCCCCC
>Mature Secondary Structure
MNNLLTYFKGLAMGAADVVPGVSGGTIAFITGILDKLLDSVRAINPSLIKVIREEGGKAA
CCHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
WARINGTFLVCLLGGILTSIFSLAKLISYLLAHHPIPVWSFFFGLILVSVWHMLRQVKGF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
DAGRIALFILGAVVAWGITVLTPTEIPATYLNVFLGGAIAICAMILPGISGSFILLLLGL
CCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
YPAVLAAAKGLQLDVLACFAAGAVCGILSFSHLLSMLLRKFHDATIFFLTGLMLGTLGKI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WPWKETLSWRTNSHGEQVPLAQQNLTPWGFEQLTGESSQLGFAIVCALVGIALVLIIEKL
CCCHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
GEGKPSR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA