Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775884

Identifier: 119775884

GI number: 119775884

Start: 3290523

End: 3290936

Strand: Reverse

Name: 119775884

Synonym: Sama_2752

Alternate gene names: NA

Gene position: 3290936-3290523 (Counterclockwise)

Preceding gene: 119775885

Following gene: 119775881

Centisome position: 76.42

GC content: 57.97

Gene sequence:

>414_bases
ATGCAACCCATGCAAATTGGTGAGGCCCATTTCACGGCCAGCACCCTGACACTCGAATTCACCGATGGGCGACGTCATAC
CCTGACCCAGGCTCAAGGGGCCTTGCTGTTGATGCTCGGCGCCGAGCGGGGGCGAGTGGTATCCCGCTCAAGCTTGCGTG
GTGCCCTCAAGCAAGTGGGGGCCAATGAGCGTAAATTGGAGCGGGAAATGCGCTCGCTGGGGATGCTGATGGGGCCCGAT
TGGCGTTACCTGCTCGAAGAGGTAGGGAGCGAGGGCTATTTACTGCACTCTGGGATGCGTCCCATCGCACGGCTTTTTTC
GAGGCCTGTCAGAGGCTTGTCCTGGCTTCATTGTTTTGCACTTGCCTGTCTGGGCATGTTGGCAGTGTTGCTGGTACTGC
TTATCTGGTCTTAA

Upstream 100 bases:

>100_bases
GACGCTCACAAATTCTGCTTTTTCCTCCTCAGTGCTTAAACGGGATCACACCCCAGGGATAACGGATTCTCTATACTGAG
GGCATTATTACTTTTCGGAT

Downstream 100 bases:

>100_bases
CGACAAAAAAACGGATAGTGCCTGAGCACTATCCGTTGTAAGGAAAAAAAAGTCGGGGGCGTGAGGCGGACTTGACCCCC
GTTATCGCATTACGGCGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPD
WRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS

Sequences:

>Translated_137_residues
MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPD
WRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS
>Mature_137_residues
MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPD
WRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15308; Mature: 15308

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVG
CCCCCCCCHHEEEEEEEEEECCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC
ANERKLEREMRSLGMLMGPDWRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFA
CCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
LACLGMLAVLLVLLIWS
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQPMQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVG
CCCCCCCCHHEEEEEEEEEECCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC
ANERKLEREMRSLGMLMGPDWRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFA
CCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
LACLGMLAVLLVLLIWS
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA