| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yedI [H]
Identifier: 119775867
GI number: 119775867
Start: 3268191
End: 3269120
Strand: Reverse
Name: yedI [H]
Synonym: Sama_2735
Alternate gene names: 119775867
Gene position: 3269120-3268191 (Counterclockwise)
Preceding gene: 119775869
Following gene: 119775866
Centisome position: 75.92
GC content: 56.02
Gene sequence:
>930_bases ATGGCTGGAGCCAGTTTGCTCACCCTACTGGATGATATTGCGACCATTCTGGATGATGTGTCTGTGATGAGTAAGGTTGC TGCCAAGAAAACCGCCGGGGTGCTGGGGGACGATTTGGCCCTCAACGCCCAACAGGTCACCGGGGTTAATGCCGACCGGG AGTTACCCGTGGTGTGGGCCGTGGCCAAGGGCTCATTTCTCAATAAGTTAATCCTGGTTCCCCTGGCGCTGCTCATCAGC GCCTTTGTCCCTTGGCTGGTGACGCCTCTGTTGATGTTCGGTGGCCTGTTTTTGTGTTTCGAAGGCTTTGAAAAGCTGTG GCATGCCAGAGCCAAGCATGTGCCGGTGGAGGGTGAAGATGCCCACGAGGCATTGGTGCCAAAGGGCATGGACCCCCAAG AATATGAAAAGCAAAAGGTGAAAGGTGCGATACGCACCGATTTTGTGCTCTCGGCAGAGATCATTGCCATTACCCTGGGC GTGGTAGCCGAGCAACCCTTTATGACCCAGGTCGCGACCCTGTCCATCATTGCGGTGCTGATGACCATAGGCGTTTATGG CTTGGTGGCGGGCATAGTCAAACTCGATGATTTGGGACTCTGGCTGTCGCGTAAATCCGCTGCATTGGCCAAGATGGTCG GTAACCTGCTGCTGGCTGCGGCGCCCAAACTGATGAAACTCTTATCTGTGGTGGGTACGGCCGCCATGTTTATGGTGGGG GGAGGCATCCTTACCCACGGTATCCATGTGCTTCACGACGGTATCAACGCTGCGGCGGCGCGGGTTGGGGCGATTGAGGC CATAGGTCCTGTGCTCGAATTCTTTACCCCCAGTGCGCTGAATCTGCTGTTTGGCATAGTCGCGGGGGCTGTGGCCGTGC TCGTGATGACCTTGATTGCAAAGTTTAAACCCGCAAAGGCGGCGAATTGA
Upstream 100 bases:
>100_bases TGCCGTTACTCTGACACTTTTGCATCCCGGGGGTGCGTTTTGCCGAAGGGATGGATTAGGATAACCGCAACCGATTTCGG AGTTTTCACAAGGAGTTGTT
Downstream 100 bases:
>100_bases TTATTCACCGTTTTTTGTCAAAGTCGCATTGATGACACAGTACTTTGCCGGATGTAAATCGGGCTGTATACACTGAGCCC CGAGTCATCGCCGGGTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MAGASLLTLLDDIATILDDVSVMSKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWAVAKGSFLNKLILVPLALLIS AFVPWLVTPLLMFGGLFLCFEGFEKLWHARAKHVPVEGEDAHEALVPKGMDPQEYEKQKVKGAIRTDFVLSAEIIAITLG VVAEQPFMTQVATLSIIAVLMTIGVYGLVAGIVKLDDLGLWLSRKSAALAKMVGNLLLAAAPKLMKLLSVVGTAAMFMVG GGILTHGIHVLHDGINAAAARVGAIEAIGPVLEFFTPSALNLLFGIVAGAVAVLVMTLIAKFKPAKAAN
Sequences:
>Translated_309_residues MAGASLLTLLDDIATILDDVSVMSKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWAVAKGSFLNKLILVPLALLIS AFVPWLVTPLLMFGGLFLCFEGFEKLWHARAKHVPVEGEDAHEALVPKGMDPQEYEKQKVKGAIRTDFVLSAEIIAITLG VVAEQPFMTQVATLSIIAVLMTIGVYGLVAGIVKLDDLGLWLSRKSAALAKMVGNLLLAAAPKLMKLLSVVGTAAMFMVG GGILTHGIHVLHDGINAAAARVGAIEAIGPVLEFFTPSALNLLFGIVAGAVAVLVMTLIAKFKPAKAAN >Mature_308_residues AGASLLTLLDDIATILDDVSVMSKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWAVAKGSFLNKLILVPLALLISA FVPWLVTPLLMFGGLFLCFEGFEKLWHARAKHVPVEGEDAHEALVPKGMDPQEYEKQKVKGAIRTDFVLSAEIIAITLGV VAEQPFMTQVATLSIIAVLMTIGVYGLVAGIVKLDDLGLWLSRKSAALAKMVGNLLLAAAPKLMKLLSVVGTAAMFMVGG GILTHGIHVLHDGINAAAARVGAIEAIGPVLEFFTPSALNLLFGIVAGAVAVLVMTLIAKFKPAKAAN
Specific function: Unknown
COG id: COG2354
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788268, Length=307, Percent_Identity=58.957654723127, Blast_Score=343, Evalue=1e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008526 [H]
Pfam domain/function: PF05661 DUF808 [H]
EC number: NA
Molecular weight: Translated: 32375; Mature: 32244
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGASLLTLLDDIATILDDVSVMSKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHCCCCCCCCCCEEEE VAKGSFLNKLILVPLALLISAFVPWLVTPLLMFGGLFLCFEGFEKLWHARAKHVPVEGED ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AHEALVPKGMDPQEYEKQKVKGAIRTDFVLSAEIIAITLGVVAEQPFMTQVATLSIIAVL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH MTIGVYGLVAGIVKLDDLGLWLSRKSAALAKMVGNLLLAAAPKLMKLLSVVGTAAMFMVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GGILTHGIHVLHDGINAAAARVGAIEAIGPVLEFFTPSALNLLFGIVAGAVAVLVMTLIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH KFKPAKAAN HCCCCCCCC >Mature Secondary Structure AGASLLTLLDDIATILDDVSVMSKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHCCCCCCCCCCEEEE VAKGSFLNKLILVPLALLISAFVPWLVTPLLMFGGLFLCFEGFEKLWHARAKHVPVEGED ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AHEALVPKGMDPQEYEKQKVKGAIRTDFVLSAEIIAITLGVVAEQPFMTQVATLSIIAVL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH MTIGVYGLVAGIVKLDDLGLWLSRKSAALAKMVGNLLLAAAPKLMKLLSVVGTAAMFMVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GGILTHGIHVLHDGINAAAARVGAIEAIGPVLEFFTPSALNLLFGIVAGAVAVLVMTLIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH KFKPAKAAN HCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2527357; 7567469 [H]