Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775842

Identifier: 119775842

GI number: 119775842

Start: 3242219

End: 3242575

Strand: Reverse

Name: 119775842

Synonym: Sama_2710

Alternate gene names: NA

Gene position: 3242575-3242219 (Counterclockwise)

Preceding gene: 119775843

Following gene: 119775838

Centisome position: 75.3

GC content: 50.7

Gene sequence:

>357_bases
ATGAATATTCGATTGCTGGTTAATGGCACTGTTATCCATACCAGCCTTGATGACTCTGCGGCCGCGAGGGATTTTTTCGC
CTTGTTGCCGCTGAGTCTCACACTCACAGATTATGCAGGCACAGAGAAAATCGCTTATCTGGATACCCAGTTGTCGACAG
CGGGGTTACCCGCAGGCACTGCGGCCAATACAGGTGATATCTGCTACTACGCCCCCTGGGGAAACCTGGCCTTCTTTTAT
CGGGATTTTGGCTACGCCAGGGGATTAATAAAACTTGGCAGGCTACCGGGCGACTGCGCCTGGTTAACCGATGCCAAAGA
CATCGAATTAGTCATAGAAAAAGAGGCTCTGAACTGA

Upstream 100 bases:

>100_bases
GACCTGGCTTGAGGCGGTGACGGATGCACAGTACCTGAATGCGGCCTTACCCGGTTCCCGTTGATTCACCGCTACCATGC
CAGAGACACCGGAGGCGCAC

Downstream 100 bases:

>100_bases
GCCTCTTTTTTTGATACATCAGAACCTGGACGCCTGCATATCGATGACAAAACGGTAGTGTACGTCTGACTTTTCAAGCC
GCTCGAATGCGTCGTTTATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MNIRLLVNGTVIHTSLDDSAAARDFFALLPLSLTLTDYAGTEKIAYLDTQLSTAGLPAGTAANTGDICYYAPWGNLAFFY
RDFGYARGLIKLGRLPGDCAWLTDAKDIELVIEKEALN

Sequences:

>Translated_118_residues
MNIRLLVNGTVIHTSLDDSAAARDFFALLPLSLTLTDYAGTEKIAYLDTQLSTAGLPAGTAANTGDICYYAPWGNLAFFY
RDFGYARGLIKLGRLPGDCAWLTDAKDIELVIEKEALN
>Mature_118_residues
MNIRLLVNGTVIHTSLDDSAAARDFFALLPLSLTLTDYAGTEKIAYLDTQLSTAGLPAGTAANTGDICYYAPWGNLAFFY
RDFGYARGLIKLGRLPGDCAWLTDAKDIELVIEKEALN

Specific function: Unknown

COG id: COG4925

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12822; Mature: 12822

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRLLVNGTVIHTSLDDSAAARDFFALLPLSLTLTDYAGTEKIAYLDTQLSTAGLPAGT
CEEEEEECCEEEEEECCCCHHHHHHHEEECEEEEEECCCCCCEEEEEECCCCCCCCCCCC
AANTGDICYYAPWGNLAFFYRDFGYARGLIKLGRLPGDCAWLTDAKDIELVIEKEALN
CCCCCCEEEECCCCCEEEEEEHHHHHHHHHEECCCCCCEEEECCCCCEEEEEEECCCC
>Mature Secondary Structure
MNIRLLVNGTVIHTSLDDSAAARDFFALLPLSLTLTDYAGTEKIAYLDTQLSTAGLPAGT
CEEEEEECCEEEEEECCCCHHHHHHHEEECEEEEEECCCCCCEEEEEECCCCCCCCCCCC
AANTGDICYYAPWGNLAFFYRDFGYARGLIKLGRLPGDCAWLTDAKDIELVIEKEALN
CCCCCCEEEECCCCCEEEEEEHHHHHHHHHEECCCCCCEEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA