| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775821
Identifier: 119775821
GI number: 119775821
Start: 3218182
End: 3218928
Strand: Reverse
Name: 119775821
Synonym: Sama_2689
Alternate gene names: NA
Gene position: 3218928-3218182 (Counterclockwise)
Preceding gene: 119775823
Following gene: 119775820
Centisome position: 74.75
GC content: 59.04
Gene sequence:
>747_bases ATGAAACCGTCACAACTCGCCATTGCAACCCTGTCAGGCTTGCTGCTCAGCGCAGCCGCAATAGGCCACGGCGCCCATCA GGGCGGCATTCAGGCCAAAACTGATAAGGCGATAGAACCCGCCTTTGACATAGTGCATGCCAAAATCACCACCAAGGGCA ATGTGGCAACCTTCCACATGGGCGTTGCCGGTGAAGCCGGGAGCCTCCTTCCCAAGGCTGGTGGCAAGCTTGAGGGCGCC TCGGCCTTTGCCTACGTCTGGCCGACCAGTATCGACAGTGGCGAAGTGGGCTTTGACGCCGGGGCGGGCATTCTGGCGCT GGCGGTGGCGAGCCATCCAGACTTTGACGATACGCCTTTGTTTGATGAAAACGGCGATAACAATACCGACAATGACGGCG ACTTGTGGCACAGCCACTGGGTGGTGTTGGTCGCCGACGAGGCATGCGGCCCGGGCAAGCTCAAGGTGAAGGATATTCCC GAAGGAGCCCGCCCCAAGCTGCCCAAGACCTGGCCCGGCCTACCCCTGTATATCGACAGCCCAGGCTTCGACCCGCTGCT GAGCGGTGACAGAGTCGAAGTGAAGGTGCCATTCGACAATATCGATGTTGTCGCGTCCGCCAGCTTTGACGGGGTGACAT CTGGCCTCAGAGTCAGTGCCAATTTGCATGCGCCGCTGTTTTGTGTGGTGGATGTGTTCGATGTTGCCTCTGGCGACCTG AGTCTGCCTGGCAAGGTGAATCATTAA
Upstream 100 bases:
>100_bases TGAAGTCATGAAACAATTGTATCGCCTCGAAACTATGTTGACAAGACTGGATCATTTTGGTTTTAATTGTTTCGACTCAA AACGATCAAGGAGAGCCACT
Downstream 100 bases:
>100_bases GGAGCGGGTTATGTCGCACGTTGAATTTCCGCTGGCACCCGAACTTGCCGTCAGTGCCTGGCTCAATACGCCAACCCCGC TCAGTCTTGAGGACTTTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MKPSQLAIATLSGLLLSAAAIGHGAHQGGIQAKTDKAIEPAFDIVHAKITTKGNVATFHMGVAGEAGSLLPKAGGKLEGA SAFAYVWPTSIDSGEVGFDAGAGILALAVASHPDFDDTPLFDENGDNNTDNDGDLWHSHWVVLVADEACGPGKLKVKDIP EGARPKLPKTWPGLPLYIDSPGFDPLLSGDRVEVKVPFDNIDVVASASFDGVTSGLRVSANLHAPLFCVVDVFDVASGDL SLPGKVNH
Sequences:
>Translated_248_residues MKPSQLAIATLSGLLLSAAAIGHGAHQGGIQAKTDKAIEPAFDIVHAKITTKGNVATFHMGVAGEAGSLLPKAGGKLEGA SAFAYVWPTSIDSGEVGFDAGAGILALAVASHPDFDDTPLFDENGDNNTDNDGDLWHSHWVVLVADEACGPGKLKVKDIP EGARPKLPKTWPGLPLYIDSPGFDPLLSGDRVEVKVPFDNIDVVASASFDGVTSGLRVSANLHAPLFCVVDVFDVASGDL SLPGKVNH >Mature_248_residues MKPSQLAIATLSGLLLSAAAIGHGAHQGGIQAKTDKAIEPAFDIVHAKITTKGNVATFHMGVAGEAGSLLPKAGGKLEGA SAFAYVWPTSIDSGEVGFDAGAGILALAVASHPDFDDTPLFDENGDNNTDNDGDLWHSHWVVLVADEACGPGKLKVKDIP EGARPKLPKTWPGLPLYIDSPGFDPLLSGDRVEVKVPFDNIDVVASASFDGVTSGLRVSANLHAPLFCVVDVFDVASGDL SLPGKVNH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25665; Mature: 25665
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPSQLAIATLSGLLLSAAAIGHGAHQGGIQAKTDKAIEPAFDIVHAKITTKGNVATFHM CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEE GVAGEAGSLLPKAGGKLEGASAFAYVWPTSIDSGEVGFDAGAGILALAVASHPDFDDTPL EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC FDENGDNNTDNDGDLWHSHWVVLVADEACGPGKLKVKDIPEGARPKLPKTWPGLPLYIDS CCCCCCCCCCCCCCEEECEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECC PGFDPLLSGDRVEVKVPFDNIDVVASASFDGVTSGLRVSANLHAPLFCVVDVFDVASGDL CCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCE SLPGKVNH ECCCCCCC >Mature Secondary Structure MKPSQLAIATLSGLLLSAAAIGHGAHQGGIQAKTDKAIEPAFDIVHAKITTKGNVATFHM CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEE GVAGEAGSLLPKAGGKLEGASAFAYVWPTSIDSGEVGFDAGAGILALAVASHPDFDDTPL EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC FDENGDNNTDNDGDLWHSHWVVLVADEACGPGKLKVKDIPEGARPKLPKTWPGLPLYIDS CCCCCCCCCCCCCCEEECEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECC PGFDPLLSGDRVEVKVPFDNIDVVASASFDGVTSGLRVSANLHAPLFCVVDVFDVASGDL CCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCE SLPGKVNH ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA