| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775793
Identifier: 119775793
GI number: 119775793
Start: 3184723
End: 3186177
Strand: Reverse
Name: 119775793
Synonym: Sama_2661
Alternate gene names: NA
Gene position: 3186177-3184723 (Counterclockwise)
Preceding gene: 119775795
Following gene: 119775791
Centisome position: 73.99
GC content: 57.66
Gene sequence:
>1455_bases ATGCCCAGACTCAACCCCCTCGCTCGCACCCTCTGTCTGTCCTTCAGTATCGCTCTGGCGTTGGGGCTTACCGCTCACGC CCATGCCCAAAGCCTGAAATTGACCAACTTTCAGTTGGTGGACGTGGAGCAAGGTCGCTTGGTGCAGGGTAAACAGCTGC TGATTGAAGACGGCCGAATTGTGCGTGTTGCGCAGGCGAATGAGCCGCTTGGCGCTGACCACACACAAGATCTGGGCGGC CAGTATCTGTTGCCATCCTTGTGGGACATGCATGTGCACTTTGAGGGGCGTGAGCTGGTGGAAGATAACGCACTGCTGCT TCCCCTTTACCTGGCCTATGGCATTACGGCGGTGCGTGAAGCCGCAAGCGACCTTGCGCCGGAAGTGATGGTGTGGCGTC AGCAAATTGCCGATGGTGAACGCCTTGGTCCGCGTATCTTCTCGGCGGGACAAAAATTTGAGGGCATAGACTCGCTGTGG AGCGGTGACATGGAAGTCGGTGATGAGGCTGCCATGGGACGCGGCATGGAGAAGCTGACTGCCATGAAGGTGGATTTCAT CAAGATAACCGAAAACACCATGGCTCCGGCGCTGTATCTTAAAACCGTGGCCGAAGCTCACAGACGTGGGTTTCGGGTAT CCAGCCACATTCCCTATGGGGTAAGCGTGGCCGATGCCGCCCGTGCGGGGTTGTCGAGTATTGAGCATGTCTCCTATGTG CTGCGTTTGGGACACGCAGATGAGGCGGTCATCTCAGCGTCCGTGAGAGATGGCAGTGTGCCAGCCAAAGAAGCCGCCGC CCGCTACCGGCAAGGTTTCCAGCAGCAAGTGGCTACTGAGGGATATAAGATGCTGGCGACTGAGGGGGTAGCCGTCACGC CCACCCTGATTGGTGGCTATCAGCTGGCGCATCTTGACACCAACAATCACAGTCAGGATGCATTTTTGCGTTATCTCACC ACGGCCTTTACCGACAAATACCGCTGGCGCATAGAGCGCATGGGCGAGCAGACCGCCGAGCAGTGGCAAGCCCGTAAGCA GCGCTATGAGGCGGAGGCAAGTCAGCTGCGTCACCTGGAAGCCGCCGGGGTCATGTTGCTCGCAGGCAGTGACTCTGCCG CGCTCAATACCTATGTGTACCCTGCCGAAGGGCTGCATACCGAATTGCAGTTGTGGCAAAAGGCGGGACTGAGCCCGGCG AGAATTTTGCGCGCAGCCACCCTCGATGGCGCCAAATTTATGGGGCTGGATAAGGACTACGGCAGTATCGCCGAGGGTAA GCGGGCGGATTTGTTGGTGCTAAAAGCCAATCCGCTGGTGGATATCAGCGCAACATTGAAAATACACAGCCTGGTGCAGG GCGGGGAATATCATAACGAAGCTGAGCTGGCGCGCTGGAAAGACAATGCCGCTGCGGCGGTGCAAATCCTTAATACCGGC CGCAAGGATATCTAG
Upstream 100 bases:
>100_bases GGAAATCCACTGATGATTATTTCGTTATTTAATTTCTAAATCAAATTGCCGCATCCTAGACTGGGGGCACAATAACAAGA CTCACAAAGGATCCCTGATA
Downstream 100 bases:
>100_bases CCCGGCCAATCTGCCCGGAGCATTTGCTGCAGCCGGCTTTGGGTGCGGCGAAACTCAAATCCCAGTGCCCCCTGGCAATA AAGCTCCTCCAGGGGGACCA
Product: amidohydrolase
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Amidohydrolase Family; Hydrolase; WD40 Domain-Containing Protein Beta Propeller; Secreted Hydrolase; Organophopsphate Acid Anhydrase; Periplasmic Component Of l Biopolymer Transport System; Secreted Amidohydrolase; Exported Amidohydrolase Family Protein; Metal Dependent Amidohydrolase; Amidohydrolase-Family Protein; Endoribonuclease L-PSP; M38 Family Protein; ABC-2 Type Transporter; Membrane Anchor Amidohydrolase
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MPRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRIVRVAQANEPLGADHTQDLGG QYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVREAASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLW SGDMEVGDEAAMGRGMEKLTAMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGYQLAHLDTNNHSQDAFLRYLT TAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLEAAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPA RILRAATLDGAKFMGLDKDYGSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG RKDI
Sequences:
>Translated_484_residues MPRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRIVRVAQANEPLGADHTQDLGG QYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVREAASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLW SGDMEVGDEAAMGRGMEKLTAMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGYQLAHLDTNNHSQDAFLRYLT TAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLEAAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPA RILRAATLDGAKFMGLDKDYGSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG RKDI >Mature_483_residues PRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRIVRVAQANEPLGADHTQDLGGQ YLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVREAASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLWS GDMEVGDEAAMGRGMEKLTAMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYVL RLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGYQLAHLDTNNHSQDAFLRYLTT AFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLEAAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPAR ILRAATLDGAKFMGLDKDYGSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTGR KDI
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53080; Mature: 52949
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRI CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCEEEEECCCCCEECCCEEEEECCCE VRVAQANEPLGADHTQDLGGQYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVRE EEEEECCCCCCCCCCHHCCCCEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHH AASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLWSGDMEVGDEAAMGRGMEKLT HHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHCCHHHHH AMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV HHEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGY HHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCEEECCEEECCE QLAHLDTNNHSQDAFLRYLTTAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLE EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPARILRAATLDGAKFMGLDKDY HCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCCC GSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG CCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCC RKDI CCCC >Mature Secondary Structure PRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRI CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCEEEEECCCCCEECCCEEEEECCCE VRVAQANEPLGADHTQDLGGQYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVRE EEEEECCCCCCCCCCHHCCCCEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHH AASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLWSGDMEVGDEAAMGRGMEKLT HHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHCCHHHHH AMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV HHEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGY HHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCEEECCEEECCE QLAHLDTNNHSQDAFLRYLTTAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLE EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPARILRAATLDGAKFMGLDKDY HCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCCC GSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG CCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCC RKDI CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA