Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775793

Identifier: 119775793

GI number: 119775793

Start: 3184723

End: 3186177

Strand: Reverse

Name: 119775793

Synonym: Sama_2661

Alternate gene names: NA

Gene position: 3186177-3184723 (Counterclockwise)

Preceding gene: 119775795

Following gene: 119775791

Centisome position: 73.99

GC content: 57.66

Gene sequence:

>1455_bases
ATGCCCAGACTCAACCCCCTCGCTCGCACCCTCTGTCTGTCCTTCAGTATCGCTCTGGCGTTGGGGCTTACCGCTCACGC
CCATGCCCAAAGCCTGAAATTGACCAACTTTCAGTTGGTGGACGTGGAGCAAGGTCGCTTGGTGCAGGGTAAACAGCTGC
TGATTGAAGACGGCCGAATTGTGCGTGTTGCGCAGGCGAATGAGCCGCTTGGCGCTGACCACACACAAGATCTGGGCGGC
CAGTATCTGTTGCCATCCTTGTGGGACATGCATGTGCACTTTGAGGGGCGTGAGCTGGTGGAAGATAACGCACTGCTGCT
TCCCCTTTACCTGGCCTATGGCATTACGGCGGTGCGTGAAGCCGCAAGCGACCTTGCGCCGGAAGTGATGGTGTGGCGTC
AGCAAATTGCCGATGGTGAACGCCTTGGTCCGCGTATCTTCTCGGCGGGACAAAAATTTGAGGGCATAGACTCGCTGTGG
AGCGGTGACATGGAAGTCGGTGATGAGGCTGCCATGGGACGCGGCATGGAGAAGCTGACTGCCATGAAGGTGGATTTCAT
CAAGATAACCGAAAACACCATGGCTCCGGCGCTGTATCTTAAAACCGTGGCCGAAGCTCACAGACGTGGGTTTCGGGTAT
CCAGCCACATTCCCTATGGGGTAAGCGTGGCCGATGCCGCCCGTGCGGGGTTGTCGAGTATTGAGCATGTCTCCTATGTG
CTGCGTTTGGGACACGCAGATGAGGCGGTCATCTCAGCGTCCGTGAGAGATGGCAGTGTGCCAGCCAAAGAAGCCGCCGC
CCGCTACCGGCAAGGTTTCCAGCAGCAAGTGGCTACTGAGGGATATAAGATGCTGGCGACTGAGGGGGTAGCCGTCACGC
CCACCCTGATTGGTGGCTATCAGCTGGCGCATCTTGACACCAACAATCACAGTCAGGATGCATTTTTGCGTTATCTCACC
ACGGCCTTTACCGACAAATACCGCTGGCGCATAGAGCGCATGGGCGAGCAGACCGCCGAGCAGTGGCAAGCCCGTAAGCA
GCGCTATGAGGCGGAGGCAAGTCAGCTGCGTCACCTGGAAGCCGCCGGGGTCATGTTGCTCGCAGGCAGTGACTCTGCCG
CGCTCAATACCTATGTGTACCCTGCCGAAGGGCTGCATACCGAATTGCAGTTGTGGCAAAAGGCGGGACTGAGCCCGGCG
AGAATTTTGCGCGCAGCCACCCTCGATGGCGCCAAATTTATGGGGCTGGATAAGGACTACGGCAGTATCGCCGAGGGTAA
GCGGGCGGATTTGTTGGTGCTAAAAGCCAATCCGCTGGTGGATATCAGCGCAACATTGAAAATACACAGCCTGGTGCAGG
GCGGGGAATATCATAACGAAGCTGAGCTGGCGCGCTGGAAAGACAATGCCGCTGCGGCGGTGCAAATCCTTAATACCGGC
CGCAAGGATATCTAG

Upstream 100 bases:

>100_bases
GGAAATCCACTGATGATTATTTCGTTATTTAATTTCTAAATCAAATTGCCGCATCCTAGACTGGGGGCACAATAACAAGA
CTCACAAAGGATCCCTGATA

Downstream 100 bases:

>100_bases
CCCGGCCAATCTGCCCGGAGCATTTGCTGCAGCCGGCTTTGGGTGCGGCGAAACTCAAATCCCAGTGCCCCCTGGCAATA
AAGCTCCTCCAGGGGGACCA

Product: amidohydrolase

Products: NA

Alternate protein names: Amidohydrolase Family Protein; Amidohydrolase Family; Hydrolase; WD40 Domain-Containing Protein Beta Propeller; Secreted Hydrolase; Organophopsphate Acid Anhydrase; Periplasmic Component Of l Biopolymer Transport System; Secreted Amidohydrolase; Exported Amidohydrolase Family Protein; Metal Dependent Amidohydrolase; Amidohydrolase-Family Protein; Endoribonuclease L-PSP; M38 Family Protein; ABC-2 Type Transporter; Membrane Anchor Amidohydrolase

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MPRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRIVRVAQANEPLGADHTQDLGG
QYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVREAASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLW
SGDMEVGDEAAMGRGMEKLTAMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV
LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGYQLAHLDTNNHSQDAFLRYLT
TAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLEAAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPA
RILRAATLDGAKFMGLDKDYGSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG
RKDI

Sequences:

>Translated_484_residues
MPRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRIVRVAQANEPLGADHTQDLGG
QYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVREAASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLW
SGDMEVGDEAAMGRGMEKLTAMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV
LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGYQLAHLDTNNHSQDAFLRYLT
TAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLEAAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPA
RILRAATLDGAKFMGLDKDYGSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG
RKDI
>Mature_483_residues
PRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRIVRVAQANEPLGADHTQDLGGQ
YLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVREAASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLWS
GDMEVGDEAAMGRGMEKLTAMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYVL
RLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGYQLAHLDTNNHSQDAFLRYLTT
AFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLEAAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPAR
ILRAATLDGAKFMGLDKDYGSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTGR
KDI

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53080; Mature: 52949

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRI
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCEEEEECCCCCEECCCEEEEECCCE
VRVAQANEPLGADHTQDLGGQYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVRE
EEEEECCCCCCCCCCHHCCCCEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHH
AASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLWSGDMEVGDEAAMGRGMEKLT
HHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHCCHHHHH
AMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV
HHEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGY
HHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCEEECCEEECCE
QLAHLDTNNHSQDAFLRYLTTAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLE
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPARILRAATLDGAKFMGLDKDY
HCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCCC
GSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG
CCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCC
RKDI
CCCC
>Mature Secondary Structure 
PRLNPLARTLCLSFSIALALGLTAHAHAQSLKLTNFQLVDVEQGRLVQGKQLLIEDGRI
CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCEEEEECCCCCEECCCEEEEECCCE
VRVAQANEPLGADHTQDLGGQYLLPSLWDMHVHFEGRELVEDNALLLPLYLAYGITAVRE
EEEEECCCCCCCCCCHHCCCCEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHH
AASDLAPEVMVWRQQIADGERLGPRIFSAGQKFEGIDSLWSGDMEVGDEAAMGRGMEKLT
HHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHCCHHHHH
AMKVDFIKITENTMAPALYLKTVAEAHRRGFRVSSHIPYGVSVADAARAGLSSIEHVSYV
HHEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LRLGHADEAVISASVRDGSVPAKEAAARYRQGFQQQVATEGYKMLATEGVAVTPTLIGGY
HHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCEEECCEEECCE
QLAHLDTNNHSQDAFLRYLTTAFTDKYRWRIERMGEQTAEQWQARKQRYEAEASQLRHLE
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGVMLLAGSDSAALNTYVYPAEGLHTELQLWQKAGLSPARILRAATLDGAKFMGLDKDY
HCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCCC
GSIAEGKRADLLVLKANPLVDISATLKIHSLVQGGEYHNEAELARWKDNAAAAVQILNTG
CCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCC
RKDI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA