| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775785
Identifier: 119775785
GI number: 119775785
Start: 3178688
End: 3178870
Strand: Reverse
Name: 119775785
Synonym: Sama_2653
Alternate gene names: NA
Gene position: 3178870-3178688 (Counterclockwise)
Preceding gene: 119775791
Following gene: 119775780
Centisome position: 73.82
GC content: 51.91
Gene sequence:
>183_bases ATGCCCCTTACCAATGCTAAATCCTGGTCGCAGATGTGTGACAAGCAAGCCCGTCTGATAGAAAACATGCGTAGCCATTT TCCTGAGCGACACCAGCCATTGACCGAGCTTGGCCGCTATTGGCGTGAGCTGAAGCGTCAAATTGACTGTGGTGATGTGC CGCGCCCAAACCAGGTGAAATAA
Upstream 100 bases:
>100_bases TTATAAAAAAAGTGCACGAGGTCTCATTTGCAAACTTGAGATATGGTGTGCAAGGTTTATGATGCTAGACAGGAACTCCA CTCACGTTAAGGATGACGCC
Downstream 100 bases:
>100_bases AAAAAACCGCCCTATTGGGCGGTTTTTGTTTGGGTGGGAAGGGAGAAAGACCTGGGATCAGAAGGCGTAACTTACGCTGG CAAGCACAGTGCCCTCGGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 60; Mature: 59
Protein sequence:
>60_residues MPLTNAKSWSQMCDKQARLIENMRSHFPERHQPLTELGRYWRELKRQIDCGDVPRPNQVK
Sequences:
>Translated_60_residues MPLTNAKSWSQMCDKQARLIENMRSHFPERHQPLTELGRYWRELKRQIDCGDVPRPNQVK >Mature_59_residues PLTNAKSWSQMCDKQARLIENMRSHFPERHQPLTELGRYWRELKRQIDCGDVPRPNQVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7221; Mature: 7090
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLTNAKSWSQMCDKQARLIENMRSHFPERHQPLTELGRYWRELKRQIDCGDVPRPNQVK CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PLTNAKSWSQMCDKQARLIENMRSHFPERHQPLTELGRYWRELKRQIDCGDVPRPNQVK CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA