| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fabH [H]
Identifier: 119774647
GI number: 119774647
Start: 1833648
End: 1834772
Strand: Direct
Name: fabH [H]
Synonym: Sama_1510
Alternate gene names: 119774647
Gene position: 1833648-1834772 (Clockwise)
Preceding gene: 119774646
Following gene: 119774648
Centisome position: 42.58
GC content: 55.2
Gene sequence:
>1125_bases ATGACTCAGTCAATTGCCATTACCGGCACCGGCGTTTTTACGCCGCCGGAAGGAATAGACAATGATGCCCTGGTGGCCAG CTTCAATGCCTATGTGGATCTCTTTAACCGAGAGCATGAAGGCCAAATCGACCTTGGCCATATTGAGCCGCTTGCATACT CATCCAGTGAATTTATTGAAAAGGCCTCGGGGATTAAGCATCGCTACGTGATGGTGAAAGACGGGATCCTGGACCCTGAA ATCATGATGCCGCTTATTCCCGAGCGGCCAGCGGATGCCCTGTCACTGCAGGGTGAAATGGGGGTATTGGCCGCTCAAGA GGCACTGGCCAATGCCGGGCTGCAACCATCAGATATCGACCTGGTCATAGTCGCCTGCGCCTATACCCAAAGGGCGTATC CTGCAATGGCCATTGAAATTCAGCAGGCCCTCGGCACTTCGGGCTTCGGGTTTGACATGCAGGTGGCCTGCAGCTCGGCC ACCTTCGGATTGGCCGCCGCCAAGGGCTTGATTGCCCAGGGCAGTGCCCGGCGAGCCCTGGTGATTTGCCCTGAAATCTG CTCGGCCCAGGTGAACTACCGCGATCGCGACAGCCATTTTATTTTTGGTGATGTGGCGACAGCCATGGTCGTCGAACCTT TAGCCGGCAGTCGCAGCCACCAGAGTTTTGAAATACTGGGGCATCGCTGTGTGACCCAGTATTCCAACAACATTCGCAGC AATTTTGGCTTTCTCAATCGCTGCGATCCGGCCACGGCCTATGATGCCGACAAGCTGTTCCATCAGCAGGGGCGAAAAGT CTTCAAAGAACTCTTGCCTATGATCTACAGTCATCTCGACAGTCAGTTCGCCGATGCTGGCCTCACGCCTGAAGCCATGA AGCGGCTGTGGCTGCACCAGGCCAACATCAATATGAACCAGTTTGTGGTGAAAAAACTGCTTGGGGATGATGTGAGTGCC GATACGGCGCCGGTAGTGCTAGACCGTTATGCCAATACCGCATCGGCCGGCTCTGTCATTGCACTGCATCAACACAGAGA AGGGCTTGGCAGTGGCGACCTGGGGCTTCTGTGCTCCTTTGGCGCCGGTTATTCCATCGGCAGCTTTATTTTGCGGGCAG TGTAA
Upstream 100 bases:
>100_bases GGGATGCAAATCGTCAGGCCATTCAGGACAAGATATCGTCCACTGTGGTGATTGATTTAACCAAGCCACGGCAGACTCCG ATTTCAGAAGGAAACAAAAC
Downstream 100 bases:
>100_bases GGAGTATCGGTGTGCGGATTCTGGTGGTAGAAGACAGCAGCGTGGCAGCACGCATCCTCAAACATATGCTGACCCATCAG CTCGAGTGCAGCATTGATGT
Product: 3-oxoacyl-(acyl carrier protein) synthase III
Products: NA
Alternate protein names: 3-oxoacyl-[acyl-carrier-protein] synthase III; Beta-ketoacyl-ACP synthase III; KAS III [H]
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTQSIAITGTGVFTPPEGIDNDALVASFNAYVDLFNREHEGQIDLGHIEPLAYSSSEFIEKASGIKHRYVMVKDGILDPE IMMPLIPERPADALSLQGEMGVLAAQEALANAGLQPSDIDLVIVACAYTQRAYPAMAIEIQQALGTSGFGFDMQVACSSA TFGLAAAKGLIAQGSARRALVICPEICSAQVNYRDRDSHFIFGDVATAMVVEPLAGSRSHQSFEILGHRCVTQYSNNIRS NFGFLNRCDPATAYDADKLFHQQGRKVFKELLPMIYSHLDSQFADAGLTPEAMKRLWLHQANINMNQFVVKKLLGDDVSA DTAPVVLDRYANTASAGSVIALHQHREGLGSGDLGLLCSFGAGYSIGSFILRAV
Sequences:
>Translated_374_residues MTQSIAITGTGVFTPPEGIDNDALVASFNAYVDLFNREHEGQIDLGHIEPLAYSSSEFIEKASGIKHRYVMVKDGILDPE IMMPLIPERPADALSLQGEMGVLAAQEALANAGLQPSDIDLVIVACAYTQRAYPAMAIEIQQALGTSGFGFDMQVACSSA TFGLAAAKGLIAQGSARRALVICPEICSAQVNYRDRDSHFIFGDVATAMVVEPLAGSRSHQSFEILGHRCVTQYSNNIRS NFGFLNRCDPATAYDADKLFHQQGRKVFKELLPMIYSHLDSQFADAGLTPEAMKRLWLHQANINMNQFVVKKLLGDDVSA DTAPVVLDRYANTASAGSVIALHQHREGLGSGDLGLLCSFGAGYSIGSFILRAV >Mature_373_residues TQSIAITGTGVFTPPEGIDNDALVASFNAYVDLFNREHEGQIDLGHIEPLAYSSSEFIEKASGIKHRYVMVKDGILDPEI MMPLIPERPADALSLQGEMGVLAAQEALANAGLQPSDIDLVIVACAYTQRAYPAMAIEIQQALGTSGFGFDMQVACSSAT FGLAAAKGLIAQGSARRALVICPEICSAQVNYRDRDSHFIFGDVATAMVVEPLAGSRSHQSFEILGHRCVTQYSNNIRSN FGFLNRCDPATAYDADKLFHQQGRKVFKELLPMIYSHLDSQFADAGLTPEAMKRLWLHQANINMNQFVVKKLLGDDVSAD TAPVVLDRYANTASAGSVIALHQHREGLGSGDLGLLCSFGAGYSIGSFILRAV
Specific function: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the
COG id: COG0332
COG function: function code I; 3-oxoacyl-[acyl-carrier-protein] synthase III
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fabH family [H]
Homologues:
Organism=Escherichia coli, GI1787333, Length=330, Percent_Identity=28.1818181818182, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013751 - InterPro: IPR013747 - InterPro: IPR004655 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF08545 ACP_syn_III; PF08541 ACP_syn_III_C [H]
EC number: =2.3.1.180 [H]
Molecular weight: Translated: 40336; Mature: 40205
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSIAITGTGVFTPPEGIDNDALVASFNAYVDLFNREHEGQIDLGHIEPLAYSSSEFIE CCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHH KASGIKHRYVMVKDGILDPEIMMPLIPERPADALSLQGEMGVLAAQEALANAGLQPSDID HHCCCCEEEEEEECCCCCHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCC LVIVACAYTQRAYPAMAIEIQQALGTSGFGFDMQVACSSATFGLAAAKGLIAQGSARRAL EEEEEEHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE VICPEICSAQVNYRDRDSHFIFGDVATAMVVEPLAGSRSHQSFEILGHRCVTQYSNNIRS EECHHHHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH NFGFLNRCDPATAYDADKLFHQQGRKVFKELLPMIYSHLDSQFADAGLTPEAMKRLWLHQ CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ANINMNQFVVKKLLGDDVSADTAPVVLDRYANTASAGSVIALHQHREGLGSGDLGLLCSF CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEECHHCCCCCCCHHEEEEC GAGYSIGSFILRAV CCCCHHHHHHHHCC >Mature Secondary Structure TQSIAITGTGVFTPPEGIDNDALVASFNAYVDLFNREHEGQIDLGHIEPLAYSSSEFIE CCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHH KASGIKHRYVMVKDGILDPEIMMPLIPERPADALSLQGEMGVLAAQEALANAGLQPSDID HHCCCCEEEEEEECCCCCHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCC LVIVACAYTQRAYPAMAIEIQQALGTSGFGFDMQVACSSATFGLAAAKGLIAQGSARRAL EEEEEEHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE VICPEICSAQVNYRDRDSHFIFGDVATAMVVEPLAGSRSHQSFEILGHRCVTQYSNNIRS EECHHHHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH NFGFLNRCDPATAYDADKLFHQQGRKVFKELLPMIYSHLDSQFADAGLTPEAMKRLWLHQ CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ANINMNQFVVKKLLGDDVSADTAPVVLDRYANTASAGSVIALHQHREGLGSGDLGLLCSF CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEECHHCCCCCCCHHEEEEC GAGYSIGSFILRAV CCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA