| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774646
Identifier: 119774646
GI number: 119774646
Start: 1832524
End: 1833651
Strand: Direct
Name: 119774646
Synonym: Sama_1509
Alternate gene names: NA
Gene position: 1832524-1833651 (Clockwise)
Preceding gene: 119774644
Following gene: 119774647
Centisome position: 42.56
GC content: 55.5
Gene sequence:
>1128_bases ATGACAAAGCCGCAAGCCAATCACACAGGCGCCTTGCCAGGTGGCAAGGATCCGCGCACCATTATTACGCCCCACGCCTT CAGTGTGAATGAAGGCCTGCTTTACACGCCCCTGGCTTCCCCCGTGAAACGGGCCCTCGCCATCTCCATAGATGGTTTGG TGATTGCTGTGCTCGCCGAAGAAGCCGGGGTGGTGTTTGTGCTGCTGGTATTGCTCGCCTCTTATTTAAATAAACGCCTT ACCAGTATTGGCCGTTATGCCAAGCTGGCCATCTACCTGCTGATGACCCTGGTCATGCTTTATGTATTGTCTGAATCTTT CGTGCAGCGTGGTCAGGTCGGCGAAAACCTTGGTGAGAGGCCGTCAGACGTCGTATCGGCAACCCAGCTGCTGGCGTTGG TTCCACACACTACAGCGCTGGCGCTTTGTGACACCCCTGACTGCGTTGATGAGCAGGCCGATGCTCTTGCCACTGAGCTC GCCGCATCGTCGCTCCACCGGGAAGAAGCCGAGGCACTGCTTTTTGGTACCCTCGATGAAGTCTCGCTGACGGATGCTCA GCGTTCAGTGCTCAAAGAGAGACTTTCCATGCGTTTGGCCCAGCTGCCATTGCGCAGTGCCAACCCCGCGGGCGCCGACA TTTCTGCCGCTCCGCATGCGGGGCAGGGGTCTGTACCCGAGGCAGATAAATCCCCCGGCAAAGTGACTATATCCCCCGGG AATGACGACGAGCGGAACGTCGAAACAGGGTCTTTCGAAAACGCAGCCCCCACCGGGAATTACAGCCTCATTCAATGGGT AAAAGGCATTTTAAACGATCTGGGTCTTGGTTTCGGCTGGGCCGCTTTCTACTTTACTGTGTTTACGGCCTGGTTTGATG GCCAGACACTGGGCAAGAAACTCCTTGGGATCCGGGTGATTTCATTGGACGGCTCCAAGTTGGGACTCTGGGCTGCTTTT GGGCGCTATGGCGGCTATGGTGCGGGGTTTGCCACCGGACTATTGGGTTTTTTGCAGGTGTGTTGGGATGCAAATCGTCA GGCCATTCAGGACAAGATATCGTCCACTGTGGTGATTGATTTAACCAAGCCACGGCAGACTCCGATTTCAGAAGGAAACA AAACATGA
Upstream 100 bases:
>100_bases TTATTCATAATGTCTGATTTGTTCGGCAATTGAATGTGATAACCTCGAATCAATAACAAGAGAGTTGTCATCCACGGGTG TACAGCCGCCGGACACAAGT
Downstream 100 bases:
>100_bases CTCAGTCAATTGCCATTACCGGCACCGGCGTTTTTACGCCGCCGGAAGGAATAGACAATGATGCCCTGGTGGCCAGCTTC AATGCCTATGTGGATCTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: RDD Domain Containing Protein
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTKPQANHTGALPGGKDPRTIITPHAFSVNEGLLYTPLASPVKRALAISIDGLVIAVLAEEAGVVFVLLVLLASYLNKRL TSIGRYAKLAIYLLMTLVMLYVLSESFVQRGQVGENLGERPSDVVSATQLLALVPHTTALALCDTPDCVDEQADALATEL AASSLHREEAEALLFGTLDEVSLTDAQRSVLKERLSMRLAQLPLRSANPAGADISAAPHAGQGSVPEADKSPGKVTISPG NDDERNVETGSFENAAPTGNYSLIQWVKGILNDLGLGFGWAAFYFTVFTAWFDGQTLGKKLLGIRVISLDGSKLGLWAAF GRYGGYGAGFATGLLGFLQVCWDANRQAIQDKISSTVVIDLTKPRQTPISEGNKT
Sequences:
>Translated_375_residues MTKPQANHTGALPGGKDPRTIITPHAFSVNEGLLYTPLASPVKRALAISIDGLVIAVLAEEAGVVFVLLVLLASYLNKRL TSIGRYAKLAIYLLMTLVMLYVLSESFVQRGQVGENLGERPSDVVSATQLLALVPHTTALALCDTPDCVDEQADALATEL AASSLHREEAEALLFGTLDEVSLTDAQRSVLKERLSMRLAQLPLRSANPAGADISAAPHAGQGSVPEADKSPGKVTISPG NDDERNVETGSFENAAPTGNYSLIQWVKGILNDLGLGFGWAAFYFTVFTAWFDGQTLGKKLLGIRVISLDGSKLGLWAAF GRYGGYGAGFATGLLGFLQVCWDANRQAIQDKISSTVVIDLTKPRQTPISEGNKT >Mature_374_residues TKPQANHTGALPGGKDPRTIITPHAFSVNEGLLYTPLASPVKRALAISIDGLVIAVLAEEAGVVFVLLVLLASYLNKRLT SIGRYAKLAIYLLMTLVMLYVLSESFVQRGQVGENLGERPSDVVSATQLLALVPHTTALALCDTPDCVDEQADALATELA ASSLHREEAEALLFGTLDEVSLTDAQRSVLKERLSMRLAQLPLRSANPAGADISAAPHAGQGSVPEADKSPGKVTISPGN DDERNVETGSFENAAPTGNYSLIQWVKGILNDLGLGFGWAAFYFTVFTAWFDGQTLGKKLLGIRVISLDGSKLGLWAAFG RYGGYGAGFATGLLGFLQVCWDANRQAIQDKISSTVVIDLTKPRQTPISEGNKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39911; Mature: 39780
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKPQANHTGALPGGKDPRTIITPHAFSVNEGLLYTPLASPVKRALAISIDGLVIAVLAE CCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEEECCCHHHHHHHHHHEECCEEEEEHHH EAGVVFVLLVLLASYLNKRLTSIGRYAKLAIYLLMTLVMLYVLSESFVQRGQVGENLGER HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC PSDVVSATQLLALVPHTTALALCDTPDCVDEQADALATELAASSLHREEAEALLFGTLDE HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH VSLTDAQRSVLKERLSMRLAQLPLRSANPAGADISAAPHAGQGSVPEADKSPGKVTISPG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC NDDERNVETGSFENAAPTGNYSLIQWVKGILNDLGLGFGWAAFYFTVFTAWFDGQTLGKK CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH LLGIRVISLDGSKLGLWAAFGRYGGYGAGFATGLLGFLQVCWDANRQAIQDKISSTVVID HHCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEE LTKPRQTPISEGNKT ECCCCCCCCCCCCCC >Mature Secondary Structure TKPQANHTGALPGGKDPRTIITPHAFSVNEGLLYTPLASPVKRALAISIDGLVIAVLAE CCCCCCCCCCCCCCCCCCEEECCCCEECCCCEEECCCHHHHHHHHHHEECCEEEEEHHH EAGVVFVLLVLLASYLNKRLTSIGRYAKLAIYLLMTLVMLYVLSESFVQRGQVGENLGER HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC PSDVVSATQLLALVPHTTALALCDTPDCVDEQADALATELAASSLHREEAEALLFGTLDE HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH VSLTDAQRSVLKERLSMRLAQLPLRSANPAGADISAAPHAGQGSVPEADKSPGKVTISPG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC NDDERNVETGSFENAAPTGNYSLIQWVKGILNDLGLGFGWAAFYFTVFTAWFDGQTLGKK CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH LLGIRVISLDGSKLGLWAAFGRYGGYGAGFATGLLGFLQVCWDANRQAIQDKISSTVVID HHCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEE LTKPRQTPISEGNKT ECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA