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The map label for this gene is tqsA [H]

Identifier: 119774627

GI number: 119774627

Start: 1803781

End: 1804857

Strand: Direct

Name: tqsA [H]

Synonym: Sama_1490

Alternate gene names: 119774627

Gene position: 1803781-1804857 (Clockwise)

Preceding gene: 119774624

Following gene: 119774628

Centisome position: 41.89

GC content: 53.95

Gene sequence:

>1077_bases
TTGCCAAACCCCTTTGAACAGACCTCGGTAGCCTTCCGTGGTTTTGCCATCATGGCCTTCGTGGTGGTCATTCTGGCCGG
CATTAAAGCGGCCAGTCCCATCGTGGTTCCTTTTGTGTTGTCGGCCTTTATTGCGGTGATCTGCAACCCGGTTATCAGTT
GGATGATGCGTTTTCGGGTGCCCAAGTGGCTCGCGGTGATGCTGCTGATGTTTTTCATTGTGATGCTGGGGCTTTGGCTC
GCCACCCTGGTGGGCAGTTCCATCAACGAATTTTCCAAACAGTTGCCTCACTATCGTGATCAGCTGATTCAGCAATTTGG
CTGGATACTGGAAAAGCTGCAAACGTTAAATATCCGCATTTCCAAAGAGCAGGTGCTGGCGTATTTTGACCCGGGCATGG
CCCTGTCGATGACGACCAACATGCTGTCGGGGGTGGGGAACGTGATGGCGAACCTGTTCCTGATTATCCTGACCATTGTC
TTTATGTTATTCGAGGCCCAGTCTCTGCCGAAAAAAGTGCACCTGGCGCTGGATGACCCCGAGATGCGTTTGCAGCAAAT
CGATAAGTTTCTACACTCGGTTAATCAATATATGGTGATTAAGACGCTGGTGAGCCTGGCTACCGGCGCCGTGGTAGGGA
TTGGTCTTGCGGCTATTGGTGTTGACTATGCGCTGCTTTGGGCCGTGATCGCCTTTTTGTTTAACTACATCCCCAATATC
GGCTCGATTATCGCTGCCATTCCCGCTATCCTGCTGGCCTTTATTCAGCTTGGCCCCGCGGCGGCGGGGGGCACAGCGCT
GCTGTACCTTGGCACCAATATGGTGATGGGCAACGTGATAGAGCCCAAATTCATGGGGCGCGGGCTGGGGTTATCGACCC
TGGTGGTGTTCCTCAGTTTGATATTCTGGGGATGGCTCCTTGGCTCTGTGGGTATGCTCCTGTCGGTGCCCCTGACCATG
ATTGTGAAAATCGCCCTGGAGCGCAGCAGCAGTGGCCGCTGGCTGGCGATATTGCTCGCCGATGATGTGGACTCAGAGCT
TAAACCGGCTAACGACACTCCGGTTGATAAGGGCTGA

Upstream 100 bases:

>100_bases
CGTGGCGATCTCTGATTTCATAACCCTGTCCACTTGTCTGTCTTCAATGGAAGTTGAAGGCAAGGTTAGCAAGTTTTGTT
TGAAATAGAAGGATTTTATT

Downstream 100 bases:

>100_bases
ACGCCAAACCTGTTTCAGTAATGGGCGGCTTGGCCGCCCATTGTATTTTCAGAAGCCTATTTTTAGAGGAGCCGGGTTTT
CATGCAGGCTTTTATCGACT

Product: hypothetical protein

Products: NA

Alternate protein names: Transport of quorum-sensing signal protein [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MPNPFEQTSVAFRGFAIMAFVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRVPKWLAVMLLMFFIVMLGLWL
ATLVGSSINEFSKQLPHYRDQLIQQFGWILEKLQTLNIRISKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIV
FMLFEAQSLPKKVHLALDDPEMRLQQIDKFLHSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIAFLFNYIPNI
GSIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTM
IVKIALERSSSGRWLAILLADDVDSELKPANDTPVDKG

Sequences:

>Translated_358_residues
MPNPFEQTSVAFRGFAIMAFVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRVPKWLAVMLLMFFIVMLGLWL
ATLVGSSINEFSKQLPHYRDQLIQQFGWILEKLQTLNIRISKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIV
FMLFEAQSLPKKVHLALDDPEMRLQQIDKFLHSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIAFLFNYIPNI
GSIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTM
IVKIALERSSSGRWLAILLADDVDSELKPANDTPVDKG
>Mature_357_residues
PNPFEQTSVAFRGFAIMAFVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRVPKWLAVMLLMFFIVMLGLWLA
TLVGSSINEFSKQLPHYRDQLIQQFGWILEKLQTLNIRISKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVF
MLFEAQSLPKKVHLALDDPEMRLQQIDKFLHSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIAFLFNYIPNIG
SIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTMI
VKIALERSSSGRWLAILLADDVDSELKPANDTPVDKG

Specific function: Controls the transport of the quorum-sensing signal AI-2 either by enhancing its secretion or inhibiting its uptake and consequently represses biofilm formation and motility and affects the global gene expression in biofilms [H]

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787885, Length=325, Percent_Identity=47.3846153846154, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI87082271, Length=337, Percent_Identity=40.0593471810089, Blast_Score=257, Evalue=1e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39137; Mature: 39006

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNPFEQTSVAFRGFAIMAFVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PKWLAVMLLMFFIVMLGLWLATLVGSSINEFSKQLPHYRDQLIQQFGWILEKLQTLNIRI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEE
SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKVHLALDDP
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCH
EMRLQQIDKFLHSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIAFLFNYIPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
GSIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGLSTLVVFLSL
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCCHHHHCCCCCHHHHHHHHHH
IFWGWLLGSVGMLLSVPLTMIVKIALERSSSGRWLAILLADDVDSELKPANDTPVDKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PNPFEQTSVAFRGFAIMAFVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PKWLAVMLLMFFIVMLGLWLATLVGSSINEFSKQLPHYRDQLIQQFGWILEKLQTLNIRI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEE
SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKVHLALDDP
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCH
EMRLQQIDKFLHSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIAFLFNYIPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
GSIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGLSTLVVFLSL
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCCHHHHCCCCCHHHHHHHHHH
IFWGWLLGSVGMLLSVPLTMIVKIALERSSSGRWLAILLADDVDSELKPANDTPVDKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]