| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774613
Identifier: 119774613
GI number: 119774613
Start: 1785293
End: 1785793
Strand: Direct
Name: 119774613
Synonym: Sama_1476
Alternate gene names: NA
Gene position: 1785293-1785793 (Clockwise)
Preceding gene: 119774612
Following gene: 119774614
Centisome position: 41.46
GC content: 55.89
Gene sequence:
>501_bases ATGAGACGGCTTAGCGCATTTTGGCTAACTTTTATCGCCACTTTCGGGTTGTTGGCTGTGATTAATGTCGACATTGCCTC AAAGGAGCGGCAACTTGCCGAGGGCACAGTGCTGCGGTTTGCCCTGGCGCCCGTCGACCCCCGCTCCCTGATGCAGGGAG ACTATATGGCGCTCGCGTATGCAGTGGAGGCGCCCATATTGGGTGCGCTGACCGAGGAAGAGCGTGCCAACAGCATGACT GGTTATGTGTGGGTTACGTTGGATGAGCATGCCCGGGCGCACTTTTTTGCCATTGAACGAAGCGAGCCCAAGCCTGCTGA TGTGCAACGCGTTCAGTTCCGGCTGCGGGAAGGGCAAATAAAGCTGGCCAGCAACGCCTGGTTTTTTGAAGAAGGCAGTG CTGCGCGCTTCGATAACGCCAAATACGGTGAGTTCCGCTTGGGTGATGATGGCACTTTACTGCTCAGCGCCTTGCTGGAC GAGCAACTCAATCCGTTATAA
Upstream 100 bases:
>100_bases ATGAGTTGTCGCTGACCTTGCTGCATAAATCCATGGTGCTGATGGGGCTTGGTATTTTACTGCTGTTAGCGGGATTTGTT CTTTCTCGCAGGGAGGCATC
Downstream 100 bases:
>100_bases CTATGAAAATTAAACAGGTTTTTTAAATGGGAACTGGATCTGGCTGGCGACTGGAACGCATCCTCGATAGCCAGGTTTGA TACTTTCAGAGGTTGACCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MRRLSAFWLTFIATFGLLAVINVDIASKERQLAEGTVLRFALAPVDPRSLMQGDYMALAYAVEAPILGALTEEERANSMT GYVWVTLDEHARAHFFAIERSEPKPADVQRVQFRLREGQIKLASNAWFFEEGSAARFDNAKYGEFRLGDDGTLLLSALLD EQLNPL
Sequences:
>Translated_166_residues MRRLSAFWLTFIATFGLLAVINVDIASKERQLAEGTVLRFALAPVDPRSLMQGDYMALAYAVEAPILGALTEEERANSMT GYVWVTLDEHARAHFFAIERSEPKPADVQRVQFRLREGQIKLASNAWFFEEGSAARFDNAKYGEFRLGDDGTLLLSALLD EQLNPL >Mature_166_residues MRRLSAFWLTFIATFGLLAVINVDIASKERQLAEGTVLRFALAPVDPRSLMQGDYMALAYAVEAPILGALTEEERANSMT GYVWVTLDEHARAHFFAIERSEPKPADVQRVQFRLREGQIKLASNAWFFEEGSAARFDNAKYGEFRLGDDGTLLLSALLD EQLNPL
Specific function: Unknown
COG id: COG4929
COG function: function code S; Uncharacterized membrane-anchored protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18626; Mature: 18626
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLSAFWLTFIATFGLLAVINVDIASKERQLAEGTVLRFALAPVDPRSLMQGDYMALAY CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEEECCCCHHHHHCCCHHEEEE AVEAPILGALTEEERANSMTGYVWVTLDEHARAHFFAIERSEPKPADVQRVQFRLREGQI EHHCCHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEE KLASNAWFFEEGSAARFDNAKYGEFRLGDDGTLLLSALLDEQLNPL EEECCCEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MRRLSAFWLTFIATFGLLAVINVDIASKERQLAEGTVLRFALAPVDPRSLMQGDYMALAY CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEEECCCCHHHHHCCCHHEEEE AVEAPILGALTEEERANSMTGYVWVTLDEHARAHFFAIERSEPKPADVQRVQFRLREGQI EHHCCHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEE KLASNAWFFEEGSAARFDNAKYGEFRLGDDGTLLLSALLDEQLNPL EEECCCEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA