| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774612
Identifier: 119774612
GI number: 119774612
Start: 1784250
End: 1785296
Strand: Direct
Name: 119774612
Synonym: Sama_1475
Alternate gene names: NA
Gene position: 1784250-1785296 (Clockwise)
Preceding gene: 119774611
Following gene: 119774613
Centisome position: 41.44
GC content: 54.44
Gene sequence:
>1047_bases ATGGTGGATAAATCGCAGCTATGGCAGGGGCTTGTGGAAAAAGGCCTGACAACCAGGGATACCTTGCCAGAGAATCATCA CGGACCTCTGTGGTTAACCCTGCTGACAGGCTTATCCGGCTGGATAGCTGCCTTCTTTTTTCTGGGGTTCTCTGTGCTCC TTATTGAAGAGTTTTCCCGGTTTGATGACAAGATGGCATTGGCAGTGGGGCTGATTTACGCTGCCATCGCCAGGGGCATT TACAGTCAGGGCAAGGGAGTGGAGTTTCTCACACAACTTGGTTTTGCCATTAACCTTGCCGCCATGCTCGCGACCCTGTG GGGGCTTGCCCATTACTTTGACAATCCAGGCGTTGTGTATTGGTTGTCGGGTGCTTGCTTGCTGGCTTTGAACGGCTGGT TTTGCCGTTATGGTGTCGATGGGCAGCTTTCGGTATTGGGTGCTCTGGTGCTGTTTGCCCAGGCTTTCGACAGCGTTAAG TGTGTGGCTTGGGTGTTACCGGCGATGTTACTTGGGCTGGGGTTGGTCAATGGCCTTTGGCAGCCCTGGATACGCCTGCA GCTTTGCGGGTTGCACCTGTTCGCGCGGCGATTATCCCATGGGATGGTGTTTATGGTGCTCGCGTTACCTCTGGTGCTGG ATGAGCAGCTGCTGTATTTGGGCGCTGGCTCGATATTTGCGGGGCAGGACGGATGGGCATTCAGCATCGCCAAGGCAGCG AGTTACCTGACGTTCATTATCTTTTGTGCGGCCATACTCTGGCGGCTCAAGGTGCCGGTGTTGGGCCTTGTGATGGGTAC ACTGGGTTTAACACTGCTTTTCAGCCAGTTTTCCGGACTGGCCCTTGCCATGGTGCTGTGGCTCTTTGGCTGGCAGCGCC GGGAGCGGCTTTATGTGCTGCTGGCCTCTATGGCGGCGCTCCTCTATTTCAGCGCTTACTACTATGAGTTGTCGCTGACC TTGCTGCATAAATCCATGGTGCTGATGGGGCTTGGTATTTTACTGCTGTTAGCGGGATTTGTTCTTTCTCGCAGGGAGGC ATCATGA
Upstream 100 bases:
>100_bases AGTTTCTTGCTGGTGGGCTGCTATGTGATTGGCTGTAGCAGCGGCCTTGCGATTTATCTCAAGGGTCTTCTTCGGGAGGA AAAGATGCAGGAGATGCAAC
Downstream 100 bases:
>100_bases GACGGCTTAGCGCATTTTGGCTAACTTTTATCGCCACTTTCGGGTTGTTGGCTGTGATTAATGTCGACATTGCCTCAAAG GAGCGGCAACTTGCCGAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSRFDDKMALAVGLIYAAIARGI YSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVYWLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVK CVAWVLPAMLLGLGLVNGLWQPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVLLASMAALLYFSAYYYELSLT LLHKSMVLMGLGILLLLAGFVLSRREAS
Sequences:
>Translated_348_residues MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSRFDDKMALAVGLIYAAIARGI YSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVYWLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVK CVAWVLPAMLLGLGLVNGLWQPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVLLASMAALLYFSAYYYELSLT LLHKSMVLMGLGILLLLAGFVLSRREAS >Mature_348_residues MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSRFDDKMALAVGLIYAAIARGI YSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVYWLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVK CVAWVLPAMLLGLGLVNGLWQPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVLLASMAALLYFSAYYYELSLT LLHKSMVLMGLGILLLLAGFVLSRREAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38423; Mature: 38423
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSR CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FDDKMALAVGLIYAAIARGIYSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVY HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE WLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVKCVAWVLPAMLLGLGLVNGLW EECCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH LASMAALLYFSAYYYELSLTLLHKSMVLMGLGILLLLAGFVLSRREAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSR CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FDDKMALAVGLIYAAIARGIYSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVY HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE WLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVKCVAWVLPAMLLGLGLVNGLW EECCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH LASMAALLYFSAYYYELSLTLLHKSMVLMGLGILLLLAGFVLSRREAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA