Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774612

Identifier: 119774612

GI number: 119774612

Start: 1784250

End: 1785296

Strand: Direct

Name: 119774612

Synonym: Sama_1475

Alternate gene names: NA

Gene position: 1784250-1785296 (Clockwise)

Preceding gene: 119774611

Following gene: 119774613

Centisome position: 41.44

GC content: 54.44

Gene sequence:

>1047_bases
ATGGTGGATAAATCGCAGCTATGGCAGGGGCTTGTGGAAAAAGGCCTGACAACCAGGGATACCTTGCCAGAGAATCATCA
CGGACCTCTGTGGTTAACCCTGCTGACAGGCTTATCCGGCTGGATAGCTGCCTTCTTTTTTCTGGGGTTCTCTGTGCTCC
TTATTGAAGAGTTTTCCCGGTTTGATGACAAGATGGCATTGGCAGTGGGGCTGATTTACGCTGCCATCGCCAGGGGCATT
TACAGTCAGGGCAAGGGAGTGGAGTTTCTCACACAACTTGGTTTTGCCATTAACCTTGCCGCCATGCTCGCGACCCTGTG
GGGGCTTGCCCATTACTTTGACAATCCAGGCGTTGTGTATTGGTTGTCGGGTGCTTGCTTGCTGGCTTTGAACGGCTGGT
TTTGCCGTTATGGTGTCGATGGGCAGCTTTCGGTATTGGGTGCTCTGGTGCTGTTTGCCCAGGCTTTCGACAGCGTTAAG
TGTGTGGCTTGGGTGTTACCGGCGATGTTACTTGGGCTGGGGTTGGTCAATGGCCTTTGGCAGCCCTGGATACGCCTGCA
GCTTTGCGGGTTGCACCTGTTCGCGCGGCGATTATCCCATGGGATGGTGTTTATGGTGCTCGCGTTACCTCTGGTGCTGG
ATGAGCAGCTGCTGTATTTGGGCGCTGGCTCGATATTTGCGGGGCAGGACGGATGGGCATTCAGCATCGCCAAGGCAGCG
AGTTACCTGACGTTCATTATCTTTTGTGCGGCCATACTCTGGCGGCTCAAGGTGCCGGTGTTGGGCCTTGTGATGGGTAC
ACTGGGTTTAACACTGCTTTTCAGCCAGTTTTCCGGACTGGCCCTTGCCATGGTGCTGTGGCTCTTTGGCTGGCAGCGCC
GGGAGCGGCTTTATGTGCTGCTGGCCTCTATGGCGGCGCTCCTCTATTTCAGCGCTTACTACTATGAGTTGTCGCTGACC
TTGCTGCATAAATCCATGGTGCTGATGGGGCTTGGTATTTTACTGCTGTTAGCGGGATTTGTTCTTTCTCGCAGGGAGGC
ATCATGA

Upstream 100 bases:

>100_bases
AGTTTCTTGCTGGTGGGCTGCTATGTGATTGGCTGTAGCAGCGGCCTTGCGATTTATCTCAAGGGTCTTCTTCGGGAGGA
AAAGATGCAGGAGATGCAAC

Downstream 100 bases:

>100_bases
GACGGCTTAGCGCATTTTGGCTAACTTTTATCGCCACTTTCGGGTTGTTGGCTGTGATTAATGTCGACATTGCCTCAAAG
GAGCGGCAACTTGCCGAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSRFDDKMALAVGLIYAAIARGI
YSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVYWLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVK
CVAWVLPAMLLGLGLVNGLWQPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA
SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVLLASMAALLYFSAYYYELSLT
LLHKSMVLMGLGILLLLAGFVLSRREAS

Sequences:

>Translated_348_residues
MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSRFDDKMALAVGLIYAAIARGI
YSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVYWLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVK
CVAWVLPAMLLGLGLVNGLWQPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA
SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVLLASMAALLYFSAYYYELSLT
LLHKSMVLMGLGILLLLAGFVLSRREAS
>Mature_348_residues
MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSRFDDKMALAVGLIYAAIARGI
YSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVYWLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVK
CVAWVLPAMLLGLGLVNGLWQPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA
SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVLLASMAALLYFSAYYYELSLT
LLHKSMVLMGLGILLLLAGFVLSRREAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38423; Mature: 38423

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSR
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDDKMALAVGLIYAAIARGIYSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVY
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
WLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVKCVAWVLPAMLLGLGLVNGLW
EECCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LASMAALLYFSAYYYELSLTLLHKSMVLMGLGILLLLAGFVLSRREAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVDKSQLWQGLVEKGLTTRDTLPENHHGPLWLTLLTGLSGWIAAFFFLGFSVLLIEEFSR
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDDKMALAVGLIYAAIARGIYSQGKGVEFLTQLGFAINLAAMLATLWGLAHYFDNPGVVY
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
WLSGACLLALNGWFCRYGVDGQLSVLGALVLFAQAFDSVKCVAWVLPAMLLGLGLVNGLW
EECCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPWIRLQLCGLHLFARRLSHGMVFMVLALPLVLDEQLLYLGAGSIFAGQDGWAFSIAKAA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
SYLTFIIFCAAILWRLKVPVLGLVMGTLGLTLLFSQFSGLALAMVLWLFGWQRRERLYVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LASMAALLYFSAYYYELSLTLLHKSMVLMGLGILLLLAGFVLSRREAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA