Click here to switch to the map view.

The map label for this gene is ydjA [H]

Identifier: 119774594

GI number: 119774594

Start: 1767332

End: 1767880

Strand: Direct

Name: ydjA [H]

Synonym: Sama_1457

Alternate gene names: 119774594

Gene position: 1767332-1767880 (Clockwise)

Preceding gene: 119774593

Following gene: 119774597

Centisome position: 41.04

GC content: 57.38

Gene sequence:

>549_bases
TTGGATGCTTTAACCTTATTGCTTACCCGTCAATCCTGTCCCCGTTTGGTTGACCCCGCGCCAAATGATACCGAGCTGAA
AACCATACTCGATGCTGCTATCAGGGTTCCGGATCATGGCGCACTGAGCCCCTTCGAATTCATTATCGCCACCGGCGACG
GTCTGGACCGACTGGGCAGCATTTTTGAGTCCGCGGCCAGGGAGCAGGGGGCTGACGACGCCTTTATTGCCAAAGCCGCT
TCTATGCCAAAACGGGCGCCCATGGTCGTCACCATAGTGGCCAAGTGTCAGGAACATCCCAAGGTGCCTGTGCTGGAGCA
ACAGATTGCAGCTGGCTGTGCCGCGATGGCGATGCAACAGGCGGCGTTTGCCTTGGGTCTGGGCGGTATTTGGCGCACGG
GCGATTTTGCCTTTGACCGAGCGGTACATCAGGCACTTGGCTTGACGGAAATGGACCAGATAGTCGGGTTTCTCTACCTG
GGCACTCCCGCCGTTGATGCGCCGGTGAAACCTGGCAGAGACGGTATGCAGTACGCTCGTTATCTCTAG

Upstream 100 bases:

>100_bases
CGGATTTACCTGTAAAGGACAGAACGACGGGGTAAATCTGCTTTCTTTGCCCCGACGATTTGCTATCCTGCACAGGATAA
ATGAATAAGAGGATAACTCA

Downstream 100 bases:

>100_bases
CTGAGTGTACTCAATCAAAAAAGGCCCCCAGGGGCCTTTTTTGCATTAATCCAGTCCGATACCCACATCCAGACTGTCAA
ACCAATCCAAAAAGGCTTTC

Product: nitroreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDALTLLLTRQSCPRLVDPAPNDTELKTILDAAIRVPDHGALSPFEFIIATGDGLDRLGSIFESAAREQGADDAFIAKAA
SMPKRAPMVVTIVAKCQEHPKVPVLEQQIAAGCAAMAMQQAAFALGLGGIWRTGDFAFDRAVHQALGLTEMDQIVGFLYL
GTPAVDAPVKPGRDGMQYARYL

Sequences:

>Translated_182_residues
MDALTLLLTRQSCPRLVDPAPNDTELKTILDAAIRVPDHGALSPFEFIIATGDGLDRLGSIFESAAREQGADDAFIAKAA
SMPKRAPMVVTIVAKCQEHPKVPVLEQQIAAGCAAMAMQQAAFALGLGGIWRTGDFAFDRAVHQALGLTEMDQIVGFLYL
GTPAVDAPVKPGRDGMQYARYL
>Mature_182_residues
MDALTLLLTRQSCPRLVDPAPNDTELKTILDAAIRVPDHGALSPFEFIIATGDGLDRLGSIFESAAREQGADDAFIAKAA
SMPKRAPMVVTIVAKCQEHPKVPVLEQQIAAGCAAMAMQQAAFALGLGGIWRTGDFAFDRAVHQALGLTEMDQIVGFLYL
GTPAVDAPVKPGRDGMQYARYL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=167, Percent_Identity=49.7005988023952, Blast_Score=177, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 19439; Mature: 19439

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALTLLLTRQSCPRLVDPAPNDTELKTILDAAIRVPDHGALSPFEFIIATGDGLDRLGS
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
IFESAAREQGADDAFIAKAASMPKRAPMVVTIVAKCQEHPKVPVLEQQIAAGCAAMAMQQ
HHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AAFALGLGGIWRTGDFAFDRAVHQALGLTEMDQIVGFLYLGTPAVDAPVKPGRDGMQYAR
HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
YL
CC
>Mature Secondary Structure
MDALTLLLTRQSCPRLVDPAPNDTELKTILDAAIRVPDHGALSPFEFIIATGDGLDRLGS
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
IFESAAREQGADDAFIAKAASMPKRAPMVVTIVAKCQEHPKVPVLEQQIAAGCAAMAMQQ
HHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AAFALGLGGIWRTGDFAFDRAVHQALGLTEMDQIVGFLYLGTPAVDAPVKPGRDGMQYAR
HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
YL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]