| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774593
Identifier: 119774593
GI number: 119774593
Start: 1766619
End: 1767215
Strand: Direct
Name: 119774593
Synonym: Sama_1456
Alternate gene names: NA
Gene position: 1766619-1767215 (Clockwise)
Preceding gene: 119774592
Following gene: 119774594
Centisome position: 41.03
GC content: 54.77
Gene sequence:
>597_bases ATGGCGCATTTTATTCATTCTCTTAATCTGAAAGCCCGGCATCTTGGCGAGGCACTGGCACCACTGGCATTGAGGGTGTA TTTGGCCCCTGTGCTGATGCAGGCAGGCTATAACAAACTAAGCCACTTTGACGACACGGCCGCCTGGTTCGGCAATCCGG ACTGGGGCCTTGGTTTGCCATTCCCCGAGCTGATGACGGCACTTGCGGCAGGCACGGAGTTTTTTGGTGCTATCCTGCTG ATATTGGGGCTCTTTACCCGACTTATCTCTATTCCGCTGATGGTTACCATGCTGGTGGCCGCATTCACAGTGCATTGGCA AAATGGATGGCTCGCCATTGCAGACCCTTCAAGCTGGCTTGCCAACGAACAGGTTATGGCGTCGGCCGAGCGGCTCGCCA AAGCCAGGAGTCTGCTGCAGGAACATGGCAACTACGATTGGCTAACCGGTAGTGGTAACTTTGTGGTACTCAATAACGGT ATCGAATTTGCCATCACGTATTTCGTGATGCTGTTGGCGCTGTTTGCCATGGGGGGCGGCCGGGTGACCAGTCTGGACTG GTGGTTGGCAAAACGCATTGGCCGCCACAATGCGTGA
Upstream 100 bases:
>100_bases CTTTATTCAATAAACAGGCTTTAGCAATAAACAGGCACCTGCAATAAAGATGGGTTGTCACAGGTCTTAGTCACATAGCA TCTGATTTTGGCGAGGACCT
Downstream 100 bases:
>100_bases GGCACGGTGAGCTATCCGGATTTACCTGTAAAGGACAGAACGACGGGGTAAATCTGCTTTCTTTGCCCCGACGATTTGCT ATCCTGCACAGGATAAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: DoxX Subfamily; DoxD-Like Family Protein; DoxX Protein
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MAHFIHSLNLKARHLGEALAPLALRVYLAPVLMQAGYNKLSHFDDTAAWFGNPDWGLGLPFPELMTALAAGTEFFGAILL ILGLFTRLISIPLMVTMLVAAFTVHWQNGWLAIADPSSWLANEQVMASAERLAKARSLLQEHGNYDWLTGSGNFVVLNNG IEFAITYFVMLLALFAMGGGRVTSLDWWLAKRIGRHNA
Sequences:
>Translated_198_residues MAHFIHSLNLKARHLGEALAPLALRVYLAPVLMQAGYNKLSHFDDTAAWFGNPDWGLGLPFPELMTALAAGTEFFGAILL ILGLFTRLISIPLMVTMLVAAFTVHWQNGWLAIADPSSWLANEQVMASAERLAKARSLLQEHGNYDWLTGSGNFVVLNNG IEFAITYFVMLLALFAMGGGRVTSLDWWLAKRIGRHNA >Mature_197_residues AHFIHSLNLKARHLGEALAPLALRVYLAPVLMQAGYNKLSHFDDTAAWFGNPDWGLGLPFPELMTALAAGTEFFGAILLI LGLFTRLISIPLMVTMLVAAFTVHWQNGWLAIADPSSWLANEQVMASAERLAKARSLLQEHGNYDWLTGSGNFVVLNNGI EFAITYFVMLLALFAMGGGRVTSLDWWLAKRIGRHNA
Specific function: Unknown
COG id: COG2259
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21840; Mature: 21709
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHFIHSLNLKARHLGEALAPLALRVYLAPVLMQAGYNKLSHFDDTAAWFGNPDWGLGLP CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCCCCCC FPELMTALAAGTEFFGAILLILGLFTRLISIPLMVTMLVAAFTVHWQNGWLAIADPSSWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCHHHH ANEQVMASAERLAKARSLLQEHGNYDWLTGSGNFVVLNNGIEFAITYFVMLLALFAMGGG HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHCCCC RVTSLDWWLAKRIGRHNA CEEHHHHHHHHHHCCCCC >Mature Secondary Structure AHFIHSLNLKARHLGEALAPLALRVYLAPVLMQAGYNKLSHFDDTAAWFGNPDWGLGLP CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCCCCCC FPELMTALAAGTEFFGAILLILGLFTRLISIPLMVTMLVAAFTVHWQNGWLAIADPSSWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCHHHH ANEQVMASAERLAKARSLLQEHGNYDWLTGSGNFVVLNNGIEFAITYFVMLLALFAMGGG HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHCCCC RVTSLDWWLAKRIGRHNA CEEHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA