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The map label for this gene is sdhD [H]

Identifier: 119774561

GI number: 119774561

Start: 1733494

End: 1733841

Strand: Direct

Name: sdhD [H]

Synonym: Sama_1424

Alternate gene names: 119774561

Gene position: 1733494-1733841 (Clockwise)

Preceding gene: 119774560

Following gene: 119774562

Centisome position: 40.26

GC content: 52.3

Gene sequence:

>348_bases
ATGGTAACCAATGCAGCAAGTTTCGGACGCAGTGGTGTCCATGACTTTATCCTTCTTCGTGCCAGTGCGGTCATTCTGGC
CTGCTACACCATCTTCTTGGTGAGCTTTATTGCACTGAGTGCGCCTCTCACTTTCGAAATCTGGCACGGGCTGTTCAGCA
CCCTGCCGATGAAAGTGTTTACCCTGCTGGCTCTGATTGCCCTGCTGATCCATGCCTGGATCGGTATCTGGCAAGTGCTG
ACTGACTACGTCAAGCAAACAGCGCTGCGTGGTGTATTACAGTTTACCTTTGTCGTGACTGCCTTCGCTTATCTGGCCGC
CGGCATTGTGATTGTGTGGGGGGTATAA

Upstream 100 bases:

>100_bases
TGGATACCGGCCGCTGGGAAGAATTGGGCTCTGGTAACGCATCAGCCAAGGCTGTATTCGTGCTGGCGATTACCTTTTCT
ATCATTGCGGGGATCTGGGT

Downstream 100 bases:

>100_bases
GGTGAGTATTCCAGTTCGCGAGTTTGATGCAGTCGTGATTGGTGCCGGCGGTGCCGGTATGCGCGCTGCACTGCAGATTT
CCAAAGAAGGCAAGAGCTGT

Product: succinate dehydrogenase, cytochrome subunit B

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVSFIALSAPLTFEIWHGLFSTLPMKVFTLLALIALLIHAWIGIWQVL
TDYVKQTALRGVLQFTFVVTAFAYLAAGIVIVWGV

Sequences:

>Translated_115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVSFIALSAPLTFEIWHGLFSTLPMKVFTLLALIALLIHAWIGIWQVL
TDYVKQTALRGVLQFTFVVTAFAYLAAGIVIVWGV
>Mature_115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVSFIALSAPLTFEIWHGLFSTLPMKVFTLLALIALLIHAWIGIWQVL
TDYVKQTALRGVLQFTFVVTAFAYLAAGIVIVWGV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=115, Percent_Identity=58.2608695652174, Blast_Score=130, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12633; Mature: 12633

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVSFIALSAPLTFEIWHGLFSTLPMKVF
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TLLALIALLIHAWIGIWQVLTDYVKQTALRGVLQFTFVVTAFAYLAAGIVIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVSFIALSAPLTFEIWHGLFSTLPMKVF
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TLLALIALLIHAWIGIWQVLTDYVKQTALRGVLQFTFVVTAFAYLAAGIVIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]