| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yqgI [H]
Identifier: 119774546
GI number: 119774546
Start: 1711855
End: 1713507
Strand: Direct
Name: yqgI [H]
Synonym: Sama_1409
Alternate gene names: 119774546
Gene position: 1711855-1713507 (Clockwise)
Preceding gene: 119774545
Following gene: 119774547
Centisome position: 39.75
GC content: 57.71
Gene sequence:
>1653_bases ATGGGTAAGTGGTTTAAATCGGGTTCCCCCTGGATTTGGATGACTGGCGGCGCGGTGAGCATCAGCCTTATCGCCGTGCT GGGCCTCTTGCTCCTTATCGCCTGGCGCGGTCTGTCGTATTTCTGGCCAGCTGACATCTACGAGTGGAAACTGCGCGATG CCAAAGGGGTGGAGTCCACCCTGATTGGCGAAATTTATGATAGTGAAGCCGTGCCCACTGAGCGCCTTATCACCGCCGGT GTGGAGTTTGCCGAGCCTCCCGGCGAGTTCGTCACCCGTTATCTGGTGAAAACCGGGAACCGTGAATTCGTGGGGCTGGA TTTCCGCTGGATTTTGGAGACTGACATCGTCTCGCGCACTACTCCCGAAGGCATTGCCAAAATCGAGCGCACCAAAAACG GTAACTTCTATGGTTATCCGCTGGCGGTGATTGAAGATGGCAAGCGTCTGGAACTTACCGACGTGCAGCACTCACTGGAA GAGCATATTGCTCGTGCGGTGAGCATTGCCGACAAGGCGATGACACTGCAAAAGCGTGATATCGGCGCCATCAACTACGA GCTGGAACGCCTGCGTCTGAAAGCGCGCCGCGCCGAACTGGACGGTGAGCTCAGCGACAGCAAAAAGCAGGAGTTTGAAG CGGCCCGTCAAAAGCTTGAAGCCGACTATCTGGTGCTGGAAAAAGAACTCTTTGCCCTGCGTGATGAAGCGGCCCGCGAC AGCGTGATTATTCGAGACATGCGCGGTGAAGAAGTGGTGCTCAAGCTCGATAGCGTGCTGGACGTGGCCTATGCAAATCG TCTCGGCTTCGTTGGCAAGATTGGTCACTGGTTCGCCGGTGTGGCGAACTTTGTCAGCGCCGATCCCCGCGAGGCCAACA CCGAAGGCGGTGTCTTCCCGGCAATCTTCGGCACCGTGTTTATGGTGCTGCTGATGGCCGTAATCGTGACGCCATTCGGG GTGATTGCCGCCATTTACCTGCACGAATATGCCAAAAAAGGCCCGCTTACCAAGATTATCCGCATTGCCGTGATTAACCT TGCCGGCGTGCCGTCGATTGTGTACGGCGTGTTCGGTCTGGGCTTCTTTGTGTACATGCTGGGGGGCTCCATCGACCAGC TGTTTTACCCCGAAGCGCTGCCGTCGCCCACCTTTGGTTCGCCCGGTGTGATTTGGTCGGCGCTGACGCTTGCCATTCTT ACCCTGCCGGTGGTGATTGTGTCCACCGAGGAAGGTTTGTCGCGTATTCCAAGCGCAGTGCGACAGGGCAGTTTGGCGCT GGGCGCCACCAAGGCTGAGACCCTGTGGCGGATTGTGATCCCCATGGCGAGCCCTGCGATTATGACGGGCCTTATCCTGG CAGTCGCACGTGCCGCCGGTGAAGTGGCGCCGCTGATGCTGGTGGGTGTAGTCAAGCTTGCGCCAACGCTGCCCATCGAC ATGAACTTCCCCTTTGTGCACCTGGACCGTAAGTTCATGCACCTCGGGTTCCATATTTACGACGTGGGCTTCCAGAGCCC CAACGTGGAGGCGGCCCGTCCGTTGGTGTACGCCACCTCCTTCCTGCTGGTGTCCGTGATTGTGGCGCTGAACCTGACCG CCATCAGTGTACGTAACCACCTGCGTGAAAAATATCGCTCCCTTGAGCATTGA
Upstream 100 bases:
>100_bases TCGTCAACGCCTCCGTGAGCGTTACAGCTCGCTGTAATGACGCTCTGATAAGCAGGAATTGTTCTGATGGAATGCATTGA AATGAATTGGGGAAAGCACA
Downstream 100 bases:
>100_bases TAATCCGACGATTATCCTGAGAATTGGTACAGAATATGATTTCGATAGACAGCACTGTAATGAAGACCGAAACCCTGGAT TTGGCCAATCTGCCCGCGTC
Product: phosphate ABC transporter permease
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MGKWFKSGSPWIWMTGGAVSISLIAVLGLLLLIAWRGLSYFWPADIYEWKLRDAKGVESTLIGEIYDSEAVPTERLITAG VEFAEPPGEFVTRYLVKTGNREFVGLDFRWILETDIVSRTTPEGIAKIERTKNGNFYGYPLAVIEDGKRLELTDVQHSLE EHIARAVSIADKAMTLQKRDIGAINYELERLRLKARRAELDGELSDSKKQEFEAARQKLEADYLVLEKELFALRDEAARD SVIIRDMRGEEVVLKLDSVLDVAYANRLGFVGKIGHWFAGVANFVSADPREANTEGGVFPAIFGTVFMVLLMAVIVTPFG VIAAIYLHEYAKKGPLTKIIRIAVINLAGVPSIVYGVFGLGFFVYMLGGSIDQLFYPEALPSPTFGSPGVIWSALTLAIL TLPVVIVSTEEGLSRIPSAVRQGSLALGATKAETLWRIVIPMASPAIMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID MNFPFVHLDRKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAISVRNHLREKYRSLEH
Sequences:
>Translated_550_residues MGKWFKSGSPWIWMTGGAVSISLIAVLGLLLLIAWRGLSYFWPADIYEWKLRDAKGVESTLIGEIYDSEAVPTERLITAG VEFAEPPGEFVTRYLVKTGNREFVGLDFRWILETDIVSRTTPEGIAKIERTKNGNFYGYPLAVIEDGKRLELTDVQHSLE EHIARAVSIADKAMTLQKRDIGAINYELERLRLKARRAELDGELSDSKKQEFEAARQKLEADYLVLEKELFALRDEAARD SVIIRDMRGEEVVLKLDSVLDVAYANRLGFVGKIGHWFAGVANFVSADPREANTEGGVFPAIFGTVFMVLLMAVIVTPFG VIAAIYLHEYAKKGPLTKIIRIAVINLAGVPSIVYGVFGLGFFVYMLGGSIDQLFYPEALPSPTFGSPGVIWSALTLAIL TLPVVIVSTEEGLSRIPSAVRQGSLALGATKAETLWRIVIPMASPAIMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID MNFPFVHLDRKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAISVRNHLREKYRSLEH >Mature_549_residues GKWFKSGSPWIWMTGGAVSISLIAVLGLLLLIAWRGLSYFWPADIYEWKLRDAKGVESTLIGEIYDSEAVPTERLITAGV EFAEPPGEFVTRYLVKTGNREFVGLDFRWILETDIVSRTTPEGIAKIERTKNGNFYGYPLAVIEDGKRLELTDVQHSLEE HIARAVSIADKAMTLQKRDIGAINYELERLRLKARRAELDGELSDSKKQEFEAARQKLEADYLVLEKELFALRDEAARDS VIIRDMRGEEVVLKLDSVLDVAYANRLGFVGKIGHWFAGVANFVSADPREANTEGGVFPAIFGTVFMVLLMAVIVTPFGV IAAIYLHEYAKKGPLTKIIRIAVINLAGVPSIVYGVFGLGFFVYMLGGSIDQLFYPEALPSPTFGSPGVIWSALTLAILT LPVVIVSTEEGLSRIPSAVRQGSLALGATKAETLWRIVIPMASPAIMTGLILAVARAAGEVAPLMLVGVVKLAPTLPIDM NFPFVHLDRKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAISVRNHLREKYRSLEH
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0581
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790163, Length=190, Percent_Identity=34.7368421052632, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1790164, Length=177, Percent_Identity=33.8983050847458, Blast_Score=69, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR005672 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 60652; Mature: 60521
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKWFKSGSPWIWMTGGAVSISLIAVLGLLLLIAWRGLSYFWPADIYEWKLRDAKGVEST CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCCCHHH LIGEIYDSEAVPTERLITAGVEFAEPPGEFVTRYLVKTGNREFVGLDFRWILETDIVSRT HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEEHHHHCCC TPEGIAKIERTKNGNFYGYPLAVIEDGKRLELTDVQHSLEEHIARAVSIADKAMTLQKRD CCHHHHHHHHCCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IGAINYELERLRLKARRAELDGELSDSKKQEFEAARQKLEADYLVLEKELFALRDEAARD CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC SVIIRDMRGEEVVLKLDSVLDVAYANRLGFVGKIGHWFAGVANFVSADPREANTEGGVFP CEEEEECCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH AIFGTVFMVLLMAVIVTPFGVIAAIYLHEYAKKGPLTKIIRIAVINLAGVPSIVYGVFGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH GFFVYMLGGSIDQLFYPEALPSPTFGSPGVIWSALTLAILTLPVVIVSTEEGLSRIPSAV HHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHH RQGSLALGATKAETLWRIVIPMASPAIMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID HCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC MNFPFVHLDRKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAISVRNH CCCCEEECCHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LREKYRSLEH HHHHHHHCCC >Mature Secondary Structure GKWFKSGSPWIWMTGGAVSISLIAVLGLLLLIAWRGLSYFWPADIYEWKLRDAKGVEST CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCCCHHH LIGEIYDSEAVPTERLITAGVEFAEPPGEFVTRYLVKTGNREFVGLDFRWILETDIVSRT HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEEEEEHHHHCCC TPEGIAKIERTKNGNFYGYPLAVIEDGKRLELTDVQHSLEEHIARAVSIADKAMTLQKRD CCHHHHHHHHCCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IGAINYELERLRLKARRAELDGELSDSKKQEFEAARQKLEADYLVLEKELFALRDEAARD CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC SVIIRDMRGEEVVLKLDSVLDVAYANRLGFVGKIGHWFAGVANFVSADPREANTEGGVFP CEEEEECCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH AIFGTVFMVLLMAVIVTPFGVIAAIYLHEYAKKGPLTKIIRIAVINLAGVPSIVYGVFGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH GFFVYMLGGSIDQLFYPEALPSPTFGSPGVIWSALTLAILTLPVVIVSTEEGLSRIPSAV HHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHH RQGSLALGATKAETLWRIVIPMASPAIMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID HCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC MNFPFVHLDRKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAISVRNH CCCCEEECCHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LREKYRSLEH HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]