Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yqgH [H]

Identifier: 119774545

GI number: 119774545

Start: 1709536

End: 1711791

Strand: Direct

Name: yqgH [H]

Synonym: Sama_1408

Alternate gene names: 119774545

Gene position: 1709536-1711791 (Clockwise)

Preceding gene: 119774543

Following gene: 119774546

Centisome position: 39.7

GC content: 55.76

Gene sequence:

>2256_bases
ATGGAAATTCAGGTCACTAAGCCTGAAATGGCTGCCAGCAGCATACTGGCAGGCAGGGGCACGGGGCGACGCGCCCTCAA
GGACAAGGCGACAGCCATTGGCGTCAGCGTAGGTGGCGTGATGGTGTTTGTCGCCCTTTTGCTGATCTTCTTCTATCTGC
TTTATGTGGTGAAGCCCATTTTTGACAGCGCCGAAGTGACTGAGCGTGTCTCTGTTGCCTATGATGCGTCAACTGCTCCC
GCCCTGATGGTGGGCAGTGATGAGCAAAATGAAATTCTCTACCGTGTGGCCACCGATGGCAGTGTTGCTTTCTATCGTGT
AAGCGGTGAGCTGGCCGATACGTTTGTGCCAACCTTTCCCGACGGTGTCAGCGTCAGCGGCGCCTATGCCGGCATGCCCT
ATGAGCAAAGCTATGCACTGGGCCTCTCCAACGGAGAACTGCGCCTGTACCGTGTCGAGTTTGGTGTGACCTACCCGGAC
AACCGCCGCCTTATTACCCCTAAACTGCGTCAGCTGAGCCAGGACGGCGAGATTCTGGTGAGTGAGTCAGGTGACGCCAT
TGCCCAGTTTGCCTATGCCCGCAGCAGTGAGCAGGTGAGTGTGGCCTATAAAGATGCCGAGGGCCGCTGGCAGCTTACCC
GCCTCGAAGGCGAAGTGAACATGATGACCGAAGAGGTTGAGTGGAGCCGCGTGAGTGCCCCGCTCGTGGATGCCCCTTCC
AGGGTTGATCAGCAATTGATGACTCCCGATCAGCGTCAGCTGATGCTGCGCGGCGGTAACAAAATTTTTGTGTACGACAT
CCGTGATGCCGAATCGCCTTCGCTGCTGCAGGTGATAGATGCGGGCCGTGCCAAACAGCAGCTCACCAGTGTGTCTTTAC
TTGCCGGCGCCAGTTCACTGCTGCTGTCTTACGACAGTGGCGACGTGGTGCAGTATTTCCAGGTCAGCAGCGACAAGGGG
CGCCTGTACCGTGAAATCCGCGACTTCAATGGCCTTGGCAACATTCAGGCGATTGGCAGCGAGTTTTATCGCAAGAGCTT
TGCCACCATTACCGCCGACGGTCGTTTGGCGCTGCTTTATACCACCAGTGAACGTGAGCTTTTGAGCGAGACCTTTGATA
TTGCCAAGCCACAGGCGCTGGGTTTCAGTCCCCGTGCCAATGGCTTGGTCGTGGATGCAGGTAATAAGCTGCATCTGTTT
GATGTGAGTAACTCACATCCGGAGGTGAGCTGGAGCGCCCTGTGGAACAAGGTGTGGTACGAAGGCTATCCAGAGCCCAA
GTTTGTGTGGCAGTCCACCTCGGGTTCCGATGACTTTGAGGCCAAGCTCAGCCTGATGCCATTGGCATTCGGCACCATGA
AGGCTGCGCTCTATGCCATGTTGTTTGCTGTGCCCATTGCCATTGCCGGTGCCATCTACACGGCGTATTTCATGTCGCCC
AAGGTGCGTGGCATAGTCAAACCCACCATTGAAATTATGGAAGCTTTGCCAACGGTTATTCTGGGCTTTTTGGCCGGTCT
GTGGCTGGCCCCCCTGGTGGAAGAGCATTTACCCGGCATTCTGGCCCTGCTGATACTGTTACCTGTATCCATTCTCCTGA
GTGCCTATGGCTGGAGCAAGTTGCCCGGCCGCTGGAAGCAACGCCTGCCTGAAACCTATCAGGAATTGATGTTGGTACCG
GTTATTTGTGCCGTGGGCTATCTGTCCTTTGCCATCAGCCCCAGCATCGAAGTGATGTTCTTCCACGGGGATACCCGTCA
GTTCATCACCAACGAGCTTGGCATCACCTTTGACCAGCGTAACGCTTTGGTAGTGGGCATTGCCATGGGCTTTGCGGTTA
TTCCAACTATCTTCTCCATTGCCGAAGACGCCATCTTCTCGGTGCCCCGTCATCTGTCCAATGGCAGTCTGGCGCTGGGG
GCTACCACCTGGCAAACCCTGACACGGGTGGTGCTTCTGACCGCAAGCCCGGGTATTTTCTCCGCCATTATGATGGGCCT
TGGTCGCGCCGTGGGTGAAACCATGATTGTGCTGATGGCAACGGGTAACACCGCCATTATGGAATGGAGCGTATTTGAAG
GTATGCGAACCCTCGCGGCCAACATTGCCGTTGAAATGCCGGAGTCGGCTATTGGCAGCAGCCACTATCGGGTGCTGTTC
CTCGCGGCCTTTGTGCTCTTTATCTTCACCTTTATTTTCAACACGATTGCCGAGGTGGTTCGTCAACGCCTCCGTGAGCG
TTACAGCTCGCTGTAA

Upstream 100 bases:

>100_bases
CCGCCATTCCAGGTTGGGTCGTTCCGATGATTAATTGTTAGCACAGCAAATCGGCGCTGCCCAGCGAAAAGAGCTCAGGC
CAATCAATCAGAGGTTATGA

Downstream 100 bases:

>100_bases
TGACGCTCTGATAAGCAGGAATTGTTCTGATGGAATGCATTGAAATGAATTGGGGAAAGCACAATGGGTAAGTGGTTTAA
ATCGGGTTCCCCCTGGATTT

Product: phosphate ABC transporter permease

Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 751; Mature: 751

Protein sequence:

>751_residues
MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPIFDSAEVTERVSVAYDASTAP
ALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFPDGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPD
NRRLITPKLRQLSQDGEILVSESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS
RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSLLLSYDSGDVVQYFQVSSDKG
RLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLYTTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLF
DVSNSHPEVSWSALWNKVWYEGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP
KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSKLPGRWKQRLPETYQELMLVP
VICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQRNALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALG
ATTWQTLTRVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF
LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL

Sequences:

>Translated_751_residues
MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPIFDSAEVTERVSVAYDASTAP
ALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFPDGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPD
NRRLITPKLRQLSQDGEILVSESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS
RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSLLLSYDSGDVVQYFQVSSDKG
RLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLYTTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLF
DVSNSHPEVSWSALWNKVWYEGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP
KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSKLPGRWKQRLPETYQELMLVP
VICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQRNALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALG
ATTWQTLTRVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF
LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL
>Mature_751_residues
MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPIFDSAEVTERVSVAYDASTAP
ALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFPDGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPD
NRRLITPKLRQLSQDGEILVSESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS
RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSLLLSYDSGDVVQYFQVSSDKG
RLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLYTTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLF
DVSNSHPEVSWSALWNKVWYEGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP
KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSKLPGRWKQRLPETYQELMLVP
VICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQRNALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALG
ATTWQTLTRVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF
LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL

Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4590

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790164, Length=246, Percent_Identity=27.2357723577236, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515
- InterPro:   IPR011864 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 82426; Mature: 82426

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPI
CCEEECCCHHHHHHHHHCCCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
FDSAEVTERVSVAYDASTAPALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFP
CCCHHHHHHHHEEECCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCHHHHCCCCCC
DGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPDNRRLITPKLRQLSQDGEILV
CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCEEECHHHHHCCCCCCEEE
SESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS
ECCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCH
RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSL
HHHHHHCCCCHHHHHEECCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCEE
LLSYDSGDVVQYFQVSSDKGRLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLY
EEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCEEEEEE
TTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLFDVSNSHPEVSWSALWNKVWY
ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHH
EGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP
CCCCCCCEEEECCCCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
LPGRWKQRLPETYQELMLVPVICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHCCEEECC
NALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALGATTWQTLTRVVLLTASPGIF
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHEEEEECCCHHH
SAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF
HHHHHHHHHHHCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHEECCHHHCCCCCHHHHH
LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPI
CCEEECCCHHHHHHHHHCCCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
FDSAEVTERVSVAYDASTAPALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFP
CCCHHHHHHHHEEECCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCHHHHCCCCCC
DGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPDNRRLITPKLRQLSQDGEILV
CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCEEECHHHHHCCCCCCEEE
SESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS
ECCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCH
RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSL
HHHHHHCCCCHHHHHEECCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCEE
LLSYDSGDVVQYFQVSSDKGRLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLY
EEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCEEEEEE
TTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLFDVSNSHPEVSWSALWNKVWY
ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHH
EGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP
CCCCCCCEEEECCCCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
LPGRWKQRLPETYQELMLVPVICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHCCEEECC
NALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALGATTWQTLTRVVLLTASPGIF
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHEEEEECCCHHH
SAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF
HHHHHHHHHHHCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHEECCHHHCCCCCHHHHH
LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; phosphate [Periplasm]; H2O [C]

Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8760913; 8969508; 9384377 [H]