| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yqgH [H]
Identifier: 119774545
GI number: 119774545
Start: 1709536
End: 1711791
Strand: Direct
Name: yqgH [H]
Synonym: Sama_1408
Alternate gene names: 119774545
Gene position: 1709536-1711791 (Clockwise)
Preceding gene: 119774543
Following gene: 119774546
Centisome position: 39.7
GC content: 55.76
Gene sequence:
>2256_bases ATGGAAATTCAGGTCACTAAGCCTGAAATGGCTGCCAGCAGCATACTGGCAGGCAGGGGCACGGGGCGACGCGCCCTCAA GGACAAGGCGACAGCCATTGGCGTCAGCGTAGGTGGCGTGATGGTGTTTGTCGCCCTTTTGCTGATCTTCTTCTATCTGC TTTATGTGGTGAAGCCCATTTTTGACAGCGCCGAAGTGACTGAGCGTGTCTCTGTTGCCTATGATGCGTCAACTGCTCCC GCCCTGATGGTGGGCAGTGATGAGCAAAATGAAATTCTCTACCGTGTGGCCACCGATGGCAGTGTTGCTTTCTATCGTGT AAGCGGTGAGCTGGCCGATACGTTTGTGCCAACCTTTCCCGACGGTGTCAGCGTCAGCGGCGCCTATGCCGGCATGCCCT ATGAGCAAAGCTATGCACTGGGCCTCTCCAACGGAGAACTGCGCCTGTACCGTGTCGAGTTTGGTGTGACCTACCCGGAC AACCGCCGCCTTATTACCCCTAAACTGCGTCAGCTGAGCCAGGACGGCGAGATTCTGGTGAGTGAGTCAGGTGACGCCAT TGCCCAGTTTGCCTATGCCCGCAGCAGTGAGCAGGTGAGTGTGGCCTATAAAGATGCCGAGGGCCGCTGGCAGCTTACCC GCCTCGAAGGCGAAGTGAACATGATGACCGAAGAGGTTGAGTGGAGCCGCGTGAGTGCCCCGCTCGTGGATGCCCCTTCC AGGGTTGATCAGCAATTGATGACTCCCGATCAGCGTCAGCTGATGCTGCGCGGCGGTAACAAAATTTTTGTGTACGACAT CCGTGATGCCGAATCGCCTTCGCTGCTGCAGGTGATAGATGCGGGCCGTGCCAAACAGCAGCTCACCAGTGTGTCTTTAC TTGCCGGCGCCAGTTCACTGCTGCTGTCTTACGACAGTGGCGACGTGGTGCAGTATTTCCAGGTCAGCAGCGACAAGGGG CGCCTGTACCGTGAAATCCGCGACTTCAATGGCCTTGGCAACATTCAGGCGATTGGCAGCGAGTTTTATCGCAAGAGCTT TGCCACCATTACCGCCGACGGTCGTTTGGCGCTGCTTTATACCACCAGTGAACGTGAGCTTTTGAGCGAGACCTTTGATA TTGCCAAGCCACAGGCGCTGGGTTTCAGTCCCCGTGCCAATGGCTTGGTCGTGGATGCAGGTAATAAGCTGCATCTGTTT GATGTGAGTAACTCACATCCGGAGGTGAGCTGGAGCGCCCTGTGGAACAAGGTGTGGTACGAAGGCTATCCAGAGCCCAA GTTTGTGTGGCAGTCCACCTCGGGTTCCGATGACTTTGAGGCCAAGCTCAGCCTGATGCCATTGGCATTCGGCACCATGA AGGCTGCGCTCTATGCCATGTTGTTTGCTGTGCCCATTGCCATTGCCGGTGCCATCTACACGGCGTATTTCATGTCGCCC AAGGTGCGTGGCATAGTCAAACCCACCATTGAAATTATGGAAGCTTTGCCAACGGTTATTCTGGGCTTTTTGGCCGGTCT GTGGCTGGCCCCCCTGGTGGAAGAGCATTTACCCGGCATTCTGGCCCTGCTGATACTGTTACCTGTATCCATTCTCCTGA GTGCCTATGGCTGGAGCAAGTTGCCCGGCCGCTGGAAGCAACGCCTGCCTGAAACCTATCAGGAATTGATGTTGGTACCG GTTATTTGTGCCGTGGGCTATCTGTCCTTTGCCATCAGCCCCAGCATCGAAGTGATGTTCTTCCACGGGGATACCCGTCA GTTCATCACCAACGAGCTTGGCATCACCTTTGACCAGCGTAACGCTTTGGTAGTGGGCATTGCCATGGGCTTTGCGGTTA TTCCAACTATCTTCTCCATTGCCGAAGACGCCATCTTCTCGGTGCCCCGTCATCTGTCCAATGGCAGTCTGGCGCTGGGG GCTACCACCTGGCAAACCCTGACACGGGTGGTGCTTCTGACCGCAAGCCCGGGTATTTTCTCCGCCATTATGATGGGCCT TGGTCGCGCCGTGGGTGAAACCATGATTGTGCTGATGGCAACGGGTAACACCGCCATTATGGAATGGAGCGTATTTGAAG GTATGCGAACCCTCGCGGCCAACATTGCCGTTGAAATGCCGGAGTCGGCTATTGGCAGCAGCCACTATCGGGTGCTGTTC CTCGCGGCCTTTGTGCTCTTTATCTTCACCTTTATTTTCAACACGATTGCCGAGGTGGTTCGTCAACGCCTCCGTGAGCG TTACAGCTCGCTGTAA
Upstream 100 bases:
>100_bases CCGCCATTCCAGGTTGGGTCGTTCCGATGATTAATTGTTAGCACAGCAAATCGGCGCTGCCCAGCGAAAAGAGCTCAGGC CAATCAATCAGAGGTTATGA
Downstream 100 bases:
>100_bases TGACGCTCTGATAAGCAGGAATTGTTCTGATGGAATGCATTGAAATGAATTGGGGAAAGCACAATGGGTAAGTGGTTTAA ATCGGGTTCCCCCTGGATTT
Product: phosphate ABC transporter permease
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPIFDSAEVTERVSVAYDASTAP ALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFPDGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPD NRRLITPKLRQLSQDGEILVSESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSLLLSYDSGDVVQYFQVSSDKG RLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLYTTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLF DVSNSHPEVSWSALWNKVWYEGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSKLPGRWKQRLPETYQELMLVP VICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQRNALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALG ATTWQTLTRVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL
Sequences:
>Translated_751_residues MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPIFDSAEVTERVSVAYDASTAP ALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFPDGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPD NRRLITPKLRQLSQDGEILVSESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSLLLSYDSGDVVQYFQVSSDKG RLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLYTTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLF DVSNSHPEVSWSALWNKVWYEGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSKLPGRWKQRLPETYQELMLVP VICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQRNALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALG ATTWQTLTRVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL >Mature_751_residues MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPIFDSAEVTERVSVAYDASTAP ALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFPDGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPD NRRLITPKLRQLSQDGEILVSESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSLLLSYDSGDVVQYFQVSSDKG RLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLYTTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLF DVSNSHPEVSWSALWNKVWYEGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSKLPGRWKQRLPETYQELMLVP VICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQRNALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALG ATTWQTLTRVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4590
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790164, Length=246, Percent_Identity=27.2357723577236, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011864 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 82426; Mature: 82426
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPI CCEEECCCHHHHHHHHHCCCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHH FDSAEVTERVSVAYDASTAPALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFP CCCHHHHHHHHEEECCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCHHHHCCCCCC DGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPDNRRLITPKLRQLSQDGEILV CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCEEECHHHHHCCCCCCEEE SESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS ECCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCH RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSL HHHHHHCCCCHHHHHEECCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCEE LLSYDSGDVVQYFQVSSDKGRLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLY EEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCEEEEEE TTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLFDVSNSHPEVSWSALWNKVWY ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHH EGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP CCCCCCCEEEECCCCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC LPGRWKQRLPETYQELMLVPVICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHCCEEECC NALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALGATTWQTLTRVVLLTASPGIF CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHEEEEECCCHHH SAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF HHHHHHHHHHHCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHEECCHHHCCCCCHHHHH LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEIQVTKPEMAASSILAGRGTGRRALKDKATAIGVSVGGVMVFVALLLIFFYLLYVVKPI CCEEECCCHHHHHHHHHCCCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHH FDSAEVTERVSVAYDASTAPALMVGSDEQNEILYRVATDGSVAFYRVSGELADTFVPTFP CCCHHHHHHHHEEECCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCHHHHCCCCCC DGVSVSGAYAGMPYEQSYALGLSNGELRLYRVEFGVTYPDNRRLITPKLRQLSQDGEILV CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCEEECHHHHHCCCCCCEEE SESGDAIAQFAYARSSEQVSVAYKDAEGRWQLTRLEGEVNMMTEEVEWSRVSAPLVDAPS ECCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCH RVDQQLMTPDQRQLMLRGGNKIFVYDIRDAESPSLLQVIDAGRAKQQLTSVSLLAGASSL HHHHHHCCCCHHHHHEECCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCEE LLSYDSGDVVQYFQVSSDKGRLYREIRDFNGLGNIQAIGSEFYRKSFATITADGRLALLY EEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCEEEEEE TTSERELLSETFDIAKPQALGFSPRANGLVVDAGNKLHLFDVSNSHPEVSWSALWNKVWY ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHH EGYPEPKFVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFAVPIAIAGAIYTAYFMSP CCCCCCCEEEECCCCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KVRGIVKPTIEIMEALPTVILGFLAGLWLAPLVEEHLPGILALLILLPVSILLSAYGWSK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC LPGRWKQRLPETYQELMLVPVICAVGYLSFAISPSIEVMFFHGDTRQFITNELGITFDQR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHCCEEECC NALVVGIAMGFAVIPTIFSIAEDAIFSVPRHLSNGSLALGATTWQTLTRVVLLTASPGIF CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHEEEEECCCHHH SAIMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVLF HHHHHHHHHHHCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHEECCHHHCCCCCHHHHH LAAFVLFIFTFIFNTIAEVVRQRLRERYSSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]