| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is rec2 [H]
Identifier: 119774473
GI number: 119774473
Start: 1627401
End: 1629698
Strand: Direct
Name: rec2 [H]
Synonym: Sama_1336
Alternate gene names: 119774473
Gene position: 1627401-1629698 (Clockwise)
Preceding gene: 119774471
Following gene: 119774474
Centisome position: 37.79
GC content: 57.66
Gene sequence:
>2298_bases GTGAAGAACCCATTTCTGCTGGGCTTTTGTGCCCTTGTCATCTCATCGCTGCTCTGGCCAGTGCTGCCGCCCTGGCCGGC CTGCCTGCTTTTGCTTGTGGCATTGGGGTGTTACCGCAAGTTGCCTGTGCTCAGTGGAGCCCTGACTGCCGTGGCGTGGG TTGCTGTGTACACCCATATGCTGTTCGATTACAGCCACCTGCAACAAGCCGGTGATTCCTGGGTGCGTGGCGAGATAATA GCACCTGTGTCTGACAGCGGCGACTGGCAGAGTATAGATATACGTCTTGTTAAACCAAAATTAATCTGGCCTGTTGAGGG CAATATCAGGCTCAACTGGCGAACAACTGACCAAATTCGTCCCGGGGAGCAGTGGGAATTTCGTCTTGCACCCCGTTCCA TCACCTCGCCCCTCAACGAAGGCGCCTTCAACGGTCAGCGTTACCTGCTATCACGCCATGTGGGTATCAAGGCAAGAGTG CTGGAAGCAAGAAAAGTATCCGAGGCGTCAGGGCTTCGCGGGCTATTACTGGAGCACATTGGCCATGCCATATCGGAGAA ACCCCGGCAGGCGCTGCTGTACCCACTGCTGACGGGGGAACAGCAGGGCATAGATGCGCAGACCTGGCAGCGGCTCAGGC AAACCGGCACCGGGCACCTGATGGCCATCTCCGGGTTGCATATGTCGGTGCTCGGAGCCTGGCTGTTGCTGCTGTGCCGC GCGCTGTTGACCTCGTTTGCGCCGCGCCAGGACAGGCGTAATTTGGTGATTGCCATGATAGTCGCCACTGTGGGGTGTCT GCTCTATGGTCTGCTGGCGGGCATGGGCATTCCTACCCGCCGGGCCTTTATCATGCTGGCATTGGTGGTGCTGCTGACCC TCAGTCGCCGTTTCGCCTCGCCCTGGGAGCGTTTGTTGTACGCCCTTGCCGCTGTGTTGTTTCTCGATCCTTTGTCGCCA CTGTCTGCCGGATTTTGGCTGTCTTTTGGCGCCATCGTGATTATGTTACTGCTATTGGACCGGCCGCCCGCCCACCTTGA GGGTGTCCCCGGTCGATTAAAGCACTACCTGATGTCGCTGGTGACGCTGCAGTTGGCACTCAGTATCGGACTGGGAGTAT TGCAGCTGGTGCTCTTTGGCGGTGTCAGTGTCCATAGCCTGTGGATTAATCTGCTGATGGTGCCCTGGTTTTCGCTGGTG GCCATTCCCCTGGCGTTGGCAGGGCTTGTGTTTTTTGTTCTCTTGCTGCCTTTTGGGATATTGGCCGACTGGGCGTTTAC TCCCGCCCTCATGGCATTGATACCGCTGGATGGGCTTCTTACGTTCAGTGACCACTTACCCGGCGCCTGGATAAGCGTGC CGGCACAGTTGATTGCGCCCCTGTGTTTTGCCATTGCAGGCGCTGTTTTATTGTTTTTGCCTTTGGCGCGGGGTGTTAAG TGGGTGAGCGCCTCCTTACTGTTGCCGCTACTGATAACTCTGAGTGTGAAAGGCGGGCCCCAATGGCAGATGCATTTACT GGATGTAGGGCAGGGGCTGGCCGTCGTGGTTTTCAGCCGGGATCAAACACTGGTGTACGACACCGGATTGGCCTTTGGTG ACACCTTCTCCCATGGTGAGCGAACCCTGGTGCCATTTTTGCGGGCCAAGGGACGTAATCACATCGATGTGTTGGTCATC AGCCATGAGGATAAAGACCATGCCGGTGGCGCCGCCGCGCTGGCCAGAGCAATGCCAGTCCACTTACTCATCAGCGATAC CCGGGCTGCAAGGGATACACTGGCGATGGAACATGCGCCTTGCCGCCCTCAGGCATTCGCCCTTGGCAATCTGTGGGTAG AGGTCCTGTCGCCCGCAGACTCACCGGCTGGAAGAGTAGACAATAATGCTTCCTGTGTGGTGACAGTGGGCGATGGTCAT TCGCGGCTGCTGTTGCCCGGCGACATTGAAGCCGAAGGGGAGACGCGGCTCCTTGGCAGTGGCGAGGCGTTGAACGCCAA TGTCTTAGTGGCACCCCACCATGGCAGCCTGACGTCATCGACTCCGGCCTTTGTCGCGGGCGTAGCACCGGCCATCACCC TCTTTGCTGCCGGCGCCAACAACAGATACGGTTTTCCTAAAGACGCCGTGGTGCAGCGATACCTGGCCCAGGGCAGTCAA ACGTTTACTGCGGCGGATACCGGCCAGATAAGCCTGTACCTTGATGATGAAATCACAGTGAAAACCTATCGGGGTTCGCT GGCCCCTTTTTGGTATAACCGGGTCTTTGGAGTTGGTGGCAGGCCGATTACAGAGTAG
Upstream 100 bases:
>100_bases TCTTTAGATGCTTGTGATCTTTCAGTGCATCCGGGTGCGGCATAAACCTTTTGATGAGCTTTTTTGGCATAGGCGGATAA TGCTGTCTTAACTTACTGCT
Downstream 100 bases:
>100_bases AATGCGGACTTTGTCATACTCTCAGATGAATCAATGACTACAGCTCATAATCAGGAAGTTTGGACTGTGTTCAAACGCCT CATGGGGTACCTCAAACCCA
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MKNPFLLGFCALVISSLLWPVLPPWPACLLLLVALGCYRKLPVLSGALTAVAWVAVYTHMLFDYSHLQQAGDSWVRGEII APVSDSGDWQSIDIRLVKPKLIWPVEGNIRLNWRTTDQIRPGEQWEFRLAPRSITSPLNEGAFNGQRYLLSRHVGIKARV LEARKVSEASGLRGLLLEHIGHAISEKPRQALLYPLLTGEQQGIDAQTWQRLRQTGTGHLMAISGLHMSVLGAWLLLLCR ALLTSFAPRQDRRNLVIAMIVATVGCLLYGLLAGMGIPTRRAFIMLALVVLLTLSRRFASPWERLLYALAAVLFLDPLSP LSAGFWLSFGAIVIMLLLLDRPPAHLEGVPGRLKHYLMSLVTLQLALSIGLGVLQLVLFGGVSVHSLWINLLMVPWFSLV AIPLALAGLVFFVLLLPFGILADWAFTPALMALIPLDGLLTFSDHLPGAWISVPAQLIAPLCFAIAGAVLLFLPLARGVK WVSASLLLPLLITLSVKGGPQWQMHLLDVGQGLAVVVFSRDQTLVYDTGLAFGDTFSHGERTLVPFLRAKGRNHIDVLVI SHEDKDHAGGAAALARAMPVHLLISDTRAARDTLAMEHAPCRPQAFALGNLWVEVLSPADSPAGRVDNNASCVVTVGDGH SRLLLPGDIEAEGETRLLGSGEALNANVLVAPHHGSLTSSTPAFVAGVAPAITLFAAGANNRYGFPKDAVVQRYLAQGSQ TFTAADTGQISLYLDDEITVKTYRGSLAPFWYNRVFGVGGRPITE
Sequences:
>Translated_765_residues MKNPFLLGFCALVISSLLWPVLPPWPACLLLLVALGCYRKLPVLSGALTAVAWVAVYTHMLFDYSHLQQAGDSWVRGEII APVSDSGDWQSIDIRLVKPKLIWPVEGNIRLNWRTTDQIRPGEQWEFRLAPRSITSPLNEGAFNGQRYLLSRHVGIKARV LEARKVSEASGLRGLLLEHIGHAISEKPRQALLYPLLTGEQQGIDAQTWQRLRQTGTGHLMAISGLHMSVLGAWLLLLCR ALLTSFAPRQDRRNLVIAMIVATVGCLLYGLLAGMGIPTRRAFIMLALVVLLTLSRRFASPWERLLYALAAVLFLDPLSP LSAGFWLSFGAIVIMLLLLDRPPAHLEGVPGRLKHYLMSLVTLQLALSIGLGVLQLVLFGGVSVHSLWINLLMVPWFSLV AIPLALAGLVFFVLLLPFGILADWAFTPALMALIPLDGLLTFSDHLPGAWISVPAQLIAPLCFAIAGAVLLFLPLARGVK WVSASLLLPLLITLSVKGGPQWQMHLLDVGQGLAVVVFSRDQTLVYDTGLAFGDTFSHGERTLVPFLRAKGRNHIDVLVI SHEDKDHAGGAAALARAMPVHLLISDTRAARDTLAMEHAPCRPQAFALGNLWVEVLSPADSPAGRVDNNASCVVTVGDGH SRLLLPGDIEAEGETRLLGSGEALNANVLVAPHHGSLTSSTPAFVAGVAPAITLFAAGANNRYGFPKDAVVQRYLAQGSQ TFTAADTGQISLYLDDEITVKTYRGSLAPFWYNRVFGVGGRPITE >Mature_765_residues MKNPFLLGFCALVISSLLWPVLPPWPACLLLLVALGCYRKLPVLSGALTAVAWVAVYTHMLFDYSHLQQAGDSWVRGEII APVSDSGDWQSIDIRLVKPKLIWPVEGNIRLNWRTTDQIRPGEQWEFRLAPRSITSPLNEGAFNGQRYLLSRHVGIKARV LEARKVSEASGLRGLLLEHIGHAISEKPRQALLYPLLTGEQQGIDAQTWQRLRQTGTGHLMAISGLHMSVLGAWLLLLCR ALLTSFAPRQDRRNLVIAMIVATVGCLLYGLLAGMGIPTRRAFIMLALVVLLTLSRRFASPWERLLYALAAVLFLDPLSP LSAGFWLSFGAIVIMLLLLDRPPAHLEGVPGRLKHYLMSLVTLQLALSIGLGVLQLVLFGGVSVHSLWINLLMVPWFSLV AIPLALAGLVFFVLLLPFGILADWAFTPALMALIPLDGLLTFSDHLPGAWISVPAQLIAPLCFAIAGAVLLFLPLARGVK WVSASLLLPLLITLSVKGGPQWQMHLLDVGQGLAVVVFSRDQTLVYDTGLAFGDTFSHGERTLVPFLRAKGRNHIDVLVI SHEDKDHAGGAAALARAMPVHLLISDTRAARDTLAMEHAPCRPQAFALGNLWVEVLSPADSPAGRVDNNASCVVTVGDGH SRLLLPGDIEAEGETRLLGSGEALNANVLVAPHHGSLTSSTPAFVAGVAPAITLFAAGANNRYGFPKDAVVQRYLAQGSQ TFTAADTGQISLYLDDEITVKTYRGSLAPFWYNRVFGVGGRPITE
Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081801, Length=687, Percent_Identity=30.2765647743814, Blast_Score=251, Evalue=1e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 82955; Mature: 82955
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPFLLGFCALVISSLLWPVLPPWPACLLLLVALGCYRKLPVLSGALTAVAWVAVYTHM CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH LFDYSHLQQAGDSWVRGEIIAPVSDSGDWQSIDIRLVKPKLIWPVEGNIRLNWRTTDQIR HHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEECCEEEEECCCCEEEEEEECCCCC PGEQWEFRLAPRSITSPLNEGAFNGQRYLLSRHVGIKARVLEARKVSEASGLRGLLLEHI CCCCCEEEECCHHHCCCHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH GHAISEKPRQALLYPLLTGEQQGIDAQTWQRLRQTGTGHLMAISGLHMSVLGAWLLLLCR HHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH ALLTSFAPRQDRRNLVIAMIVATVGCLLYGLLAGMGIPTRRAFIMLALVVLLTLSRRFAS HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC PWERLLYALAAVLFLDPLSPLSAGFWLSFGAIVIMLLLLDRPPAHLEGVPGRLKHYLMSL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHH VTLQLALSIGLGVLQLVLFGGVSVHSLWINLLMVPWFSLVAIPLALAGLVFFVLLLPFGI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADWAFTPALMALIPLDGLLTFSDHLPGAWISVPAQLIAPLCFAIAGAVLLFLPLARGVK HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH WVSASLLLPLLITLSVKGGPQWQMHLLDVGQGLAVVVFSRDQTLVYDTGLAFGDTFSHGE HHHHHHHHHHHHHEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCC RTLVPFLRAKGRNHIDVLVISHEDKDHAGGAAALARAMPVHLLISDTRAARDTLAMEHAP HHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHCCCC CRPQAFALGNLWVEVLSPADSPAGRVDNNASCVVTVGDGHSRLLLPGDIEAEGETRLLGS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEC GEALNANVLVAPHHGSLTSSTPAFVAGVAPAITLFAAGANNRYGFPKDAVVQRYLAQGSQ CCEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCC TFTAADTGQISLYLDDEITVKTYRGSLAPFWYNRVFGVGGRPITE EEEEECCCEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKNPFLLGFCALVISSLLWPVLPPWPACLLLLVALGCYRKLPVLSGALTAVAWVAVYTHM CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH LFDYSHLQQAGDSWVRGEIIAPVSDSGDWQSIDIRLVKPKLIWPVEGNIRLNWRTTDQIR HHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEECCEEEEECCCCEEEEEEECCCCC PGEQWEFRLAPRSITSPLNEGAFNGQRYLLSRHVGIKARVLEARKVSEASGLRGLLLEHI CCCCCEEEECCHHHCCCHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH GHAISEKPRQALLYPLLTGEQQGIDAQTWQRLRQTGTGHLMAISGLHMSVLGAWLLLLCR HHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH ALLTSFAPRQDRRNLVIAMIVATVGCLLYGLLAGMGIPTRRAFIMLALVVLLTLSRRFAS HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC PWERLLYALAAVLFLDPLSPLSAGFWLSFGAIVIMLLLLDRPPAHLEGVPGRLKHYLMSL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHH VTLQLALSIGLGVLQLVLFGGVSVHSLWINLLMVPWFSLVAIPLALAGLVFFVLLLPFGI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADWAFTPALMALIPLDGLLTFSDHLPGAWISVPAQLIAPLCFAIAGAVLLFLPLARGVK HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH WVSASLLLPLLITLSVKGGPQWQMHLLDVGQGLAVVVFSRDQTLVYDTGLAFGDTFSHGE HHHHHHHHHHHHHEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCC RTLVPFLRAKGRNHIDVLVISHEDKDHAGGAAALARAMPVHLLISDTRAARDTLAMEHAP HHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHCCCC CRPQAFALGNLWVEVLSPADSPAGRVDNNASCVVTVGDGHSRLLLPGDIEAEGETRLLGS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEC GEALNANVLVAPHHGSLTSSTPAFVAGVAPAITLFAAGANNRYGFPKDAVVQRYLAQGSQ CCEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCC TFTAADTGQISLYLDDEITVKTYRGSLAPFWYNRVFGVGGRPITE EEEEECCCEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063112; 7542800 [H]