Click here to switch to the map view.

The map label for this gene is yfcA [H]

Identifier: 119774403

GI number: 119774403

Start: 1552140

End: 1552922

Strand: Direct

Name: yfcA [H]

Synonym: Sama_1266

Alternate gene names: 119774403

Gene position: 1552140-1552922 (Clockwise)

Preceding gene: 119774402

Following gene: 119774404

Centisome position: 36.04

GC content: 53.77

Gene sequence:

>783_bases
ATGGATGTATTCATGGACTTTGCCTTTTCGATTGAACTTGCCGCGCTGCTCTTCTTCGTGGCCATGTTGGCCGGATTTAT
TGATGCCATCGCCGGAGGCGGTGGCCTGCTGACCATTCCTGCGCTGATGTGGGCCGGTCTTTCACCCGCTGCGGCACTGG
CCACCAATAAGCTGCAGGCGTGTGGCGGCAGTTTTTTTGCCAGCCTCTATTTTGTGCGTAAAAAAATGGTGGATTTGGCC
AGCATCAAGCTCGATATTTTCTGTGCCTTTGTGGGCGCAGCGATCGGCACCATTGCGGTGCAACTGATTGATGCGAGCAT
GCTTAAAACTCTGCTGCCTTTTTTGATGCTGGCTATTGGCGGGTATTTTCTGTTTTCCAAAAAAGTCAGTGAAGATGACA
GGCACAGGGTGTTAACCCCCACCTTGTTTGCGTTTAGCGCAGCACTCGGCATTGGTTTTTACGACGGTTTCTTTGGTCCG
GGAACCGGTAGCTTTTTCGCGCTGGCCTTTGTGAGCCTGGCCGGATTTGGGCTTGCCAAGGCCACGGCCCATGCCAAGGT
ACTTAACTTTGCCACCAATATCTCATCGCTGATCTTCTTTGCCCTCGGTGGCAAGGTGGTGTGGATGTTGGGCGGCTTGA
TGTTGCTTGGCCAGGCCATGGGTGCAACCCTGGGCTCGCGTTTGGTGGTCAACAAGGGCACGGCCATTATCAAGCCTCTG
GTGGTGCTGATGTCGGTGGTGATGAGCACCAAGCTACTTGGCGATCAGTTTCAGTGGTGGTGA

Upstream 100 bases:

>100_bases
GAACCTTCGCTGAGCCTTTCCTTTTGCTGACAAAAGGCGTTAAATGCCACAGCCCCGTCTTATCTGATGGGGCTATTTTT
ACCGCCTTTTGATTTAGCCG

Downstream 100 bases:

>100_bases
TTGGCTGAGCGCCCGGTGCTGTGGAGGTGGTTTGCGCCTTCACAGCGTCTTTGATATCCCCTAGTATGAGTCTCAATTTT
AAAGCAAAAAGGCTTTTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDVFMDFAFSIELAALLFFVAMLAGFIDAIAGGGGLLTIPALMWAGLSPAAALATNKLQACGGSFFASLYFVRKKMVDLA
SIKLDIFCAFVGAAIGTIAVQLIDASMLKTLLPFLMLAIGGYFLFSKKVSEDDRHRVLTPTLFAFSAALGIGFYDGFFGP
GTGSFFALAFVSLAGFGLAKATAHAKVLNFATNISSLIFFALGGKVVWMLGGLMLLGQAMGATLGSRLVVNKGTAIIKPL
VVLMSVVMSTKLLGDQFQWW

Sequences:

>Translated_260_residues
MDVFMDFAFSIELAALLFFVAMLAGFIDAIAGGGGLLTIPALMWAGLSPAAALATNKLQACGGSFFASLYFVRKKMVDLA
SIKLDIFCAFVGAAIGTIAVQLIDASMLKTLLPFLMLAIGGYFLFSKKVSEDDRHRVLTPTLFAFSAALGIGFYDGFFGP
GTGSFFALAFVSLAGFGLAKATAHAKVLNFATNISSLIFFALGGKVVWMLGGLMLLGQAMGATLGSRLVVNKGTAIIKPL
VVLMSVVMSTKLLGDQFQWW
>Mature_260_residues
MDVFMDFAFSIELAALLFFVAMLAGFIDAIAGGGGLLTIPALMWAGLSPAAALATNKLQACGGSFFASLYFVRKKMVDLA
SIKLDIFCAFVGAAIGTIAVQLIDASMLKTLLPFLMLAIGGYFLFSKKVSEDDRHRVLTPTLFAFSAALGIGFYDGFFGP
GTGSFFALAFVSLAGFGLAKATAHAKVLNFATNISSLIFFALGGKVVWMLGGLMLLGQAMGATLGSRLVVNKGTAIIKPL
VVLMSVVMSTKLLGDQFQWW

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family [H]

Homologues:

Organism=Escherichia coli, GI1788667, Length=256, Percent_Identity=58.203125, Blast_Score=269, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002781 [H]

Pfam domain/function: PF01925 DUF81 [H]

EC number: NA

Molecular weight: Translated: 27447; Mature: 27447

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]