Click here to switch to the map view.

The map label for this gene is torT [H]

Identifier: 119774121

GI number: 119774121

Start: 1189216

End: 1190253

Strand: Reverse

Name: torT [H]

Synonym: Sama_0984

Alternate gene names: 119774121

Gene position: 1190253-1189216 (Counterclockwise)

Preceding gene: 119774123

Following gene: 119774119

Centisome position: 27.64

GC content: 57.03

Gene sequence:

>1038_bases
GTGAACATAAGCCCCAGAATCCTTTTACTCTTGATAGCGCTGGGATTTTTTACCGCCGAGGCCGCCCCATGGCAACTTGA
GCAGCGCACGCCGTTCAACGCCATAGAGCAACAAAGCAAGGCGCTCATGCTGACGCCCCTTGAGCGTGCACATAAGCCCT
GGAAGCTGTGTGTACTGGTACCCCACTTAAAGGATGCCTATTGGATTGGCATTAACTATGGCCTCGCGGCTCAAGCAAAG
AAGCTCGGCGTCAGTTTTGAGATGTTCGAGGCTGGCGGCTACCCCAATCACGACCGCCAACAGACCCAGTTGGCCCATTG
TTTAGGCGGCGATTTTGATGCTGTGCTGCTGGGCGCCGTAACCCCGCATTTGCTCAAAGACGTGCCCGGCGGGCTTAATA
AGCCTGTACTGGCGCTGGTGAACAAGCTGGAGGATCCCCGGGTTGGCACTCATATCGGGGTGAACTGGTATCAAATGGGC
AGCCTTATCGGCAATGCCATCAAACGCCAGTTCACATCAGAGGCCAGTCTGGCGCTGCTGGCCGGGCCCGAGTCTGTGGG
TGGCACTGACCTTGTTGAGCAGGGCATAGGGCAGAGCCTCAGCGGCAGCAAGCTCAGTATTGGTGCCATTCGCCACGCCG
ACAACAACCGCCATTTGCAGCGGGAACAGCTGCAACAGCTGCTGGAATCGAGCCGTCCTGACGCCATTGTGGGCAGCGCT
GTGGCCATTGAAGTGGCGGTCAATCAGTTCGGCCAAACCCCGCCATCCTATCCCATAGTACTGGGGGCGAGTTACTTCTC
CCCGGCTATCGCCCGCGCACTGCAGCGAGGCAAAATCGCTGCAGCCTGTGACGACAAGGTGGTATTGCAGGGCATGGTGG
CAGTGGAATTGGCGGTAAGGCAATTGCAGGGCGAAACTGCCTTTGGTGATATAGGACCGGCGATTGTAGTCAGAACGGCC
AACAACAGCGATGCCGCAGCGCTGATTGAATCCTTACCCCCTGCCGAGTTTTATCCTGTTTATCGCTTTAATCCCTGA

Upstream 100 bases:

>100_bases
GAGACGTCCGGACAGACTGGAGAAGGACAATGAAGGAGGGGTCACAGGCTCACCTATAGCTGGTACACTTCGGCTGTGAT
CATCTTACGGAACTCTTGCC

Downstream 100 bases:

>100_bases
CGCTGGCAGCAAAGAGATATCCTTCGCCATGAACTGTCACAAACAGCTCTGGATTGAGCTTACCGCGCAGGCGGCGGATA
ATCACGTCTATGGTACGGTC

Product: TMAO reductase system periplasmic protein TorT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNISPRILLLLIALGFFTAEAAPWQLEQRTPFNAIEQQSKALMLTPLERAHKPWKLCVLVPHLKDAYWIGINYGLAAQAK
KLGVSFEMFEAGGYPNHDRQQTQLAHCLGGDFDAVLLGAVTPHLLKDVPGGLNKPVLALVNKLEDPRVGTHIGVNWYQMG
SLIGNAIKRQFTSEASLALLAGPESVGGTDLVEQGIGQSLSGSKLSIGAIRHADNNRHLQREQLQQLLESSRPDAIVGSA
VAIEVAVNQFGQTPPSYPIVLGASYFSPAIARALQRGKIAAACDDKVVLQGMVAVELAVRQLQGETAFGDIGPAIVVRTA
NNSDAAALIESLPPAEFYPVYRFNP

Sequences:

>Translated_345_residues
MNISPRILLLLIALGFFTAEAAPWQLEQRTPFNAIEQQSKALMLTPLERAHKPWKLCVLVPHLKDAYWIGINYGLAAQAK
KLGVSFEMFEAGGYPNHDRQQTQLAHCLGGDFDAVLLGAVTPHLLKDVPGGLNKPVLALVNKLEDPRVGTHIGVNWYQMG
SLIGNAIKRQFTSEASLALLAGPESVGGTDLVEQGIGQSLSGSKLSIGAIRHADNNRHLQREQLQQLLESSRPDAIVGSA
VAIEVAVNQFGQTPPSYPIVLGASYFSPAIARALQRGKIAAACDDKVVLQGMVAVELAVRQLQGETAFGDIGPAIVVRTA
NNSDAAALIESLPPAEFYPVYRFNP
>Mature_345_residues
MNISPRILLLLIALGFFTAEAAPWQLEQRTPFNAIEQQSKALMLTPLERAHKPWKLCVLVPHLKDAYWIGINYGLAAQAK
KLGVSFEMFEAGGYPNHDRQQTQLAHCLGGDFDAVLLGAVTPHLLKDVPGGLNKPVLALVNKLEDPRVGTHIGVNWYQMG
SLIGNAIKRQFTSEASLALLAGPESVGGTDLVEQGIGQSLSGSKLSIGAIRHADNNRHLQREQLQQLLESSRPDAIVGSA
VAIEVAVNQFGQTPPSYPIVLGASYFSPAIARALQRGKIAAACDDKVVLQGMVAVELAVRQLQGETAFGDIGPAIVVRTA
NNSDAAALIESLPPAEFYPVYRFNP

Specific function: Upon binding a putative inducer it probably interacts with torS and allows it to play a role in the induction of the torCAD operon for trimethylamine N-oxide reductase [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787228, Length=304, Percent_Identity=35.5263157894737, Blast_Score=184, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR014301 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37108; Mature: 37108

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISPRILLLLIALGFFTAEAAPWQLEQRTPFNAIEQQSKALMLTPLERAHKPWKLCVLV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCEEEECCHHHCCCCEEEEEEE
PHLKDAYWIGINYGLAAQAKKLGVSFEMFEAGGYPNHDRQQTQLAHCLGGDFDAVLLGAV
CCCCCEEEEEECCCCHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
TPHLLKDVPGGLNKPVLALVNKLEDPRVGTHIGVNWYQMGSLIGNAIKRQFTSEASLALL
CHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEE
AGPESVGGTDLVEQGIGQSLSGSKLSIGAIRHADNNRHLQREQLQQLLESSRPDAIVGSA
ECCCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCH
VAIEVAVNQFGQTPPSYPIVLGASYFSPAIARALQRGKIAAACDDKVVLQGMVAVELAVR
HHEEEEHHHHCCCCCCCCEEEECHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHH
QLQGETAFGDIGPAIVVRTANNSDAAALIESLPPAEFYPVYRFNP
HHCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MNISPRILLLLIALGFFTAEAAPWQLEQRTPFNAIEQQSKALMLTPLERAHKPWKLCVLV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCEEEECCHHHCCCCEEEEEEE
PHLKDAYWIGINYGLAAQAKKLGVSFEMFEAGGYPNHDRQQTQLAHCLGGDFDAVLLGAV
CCCCCEEEEEECCCCHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
TPHLLKDVPGGLNKPVLALVNKLEDPRVGTHIGVNWYQMGSLIGNAIKRQFTSEASLALL
CHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEE
AGPESVGGTDLVEQGIGQSLSGSKLSIGAIRHADNNRHLQREQLQQLLESSRPDAIVGSA
ECCCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCH
VAIEVAVNQFGQTPPSYPIVLGASYFSPAIARALQRGKIAAACDDKVVLQGMVAVELAVR
HHEEEEHHHHCCCCCCCCEEEECHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHH
QLQGETAFGDIGPAIVVRTANNSDAAALIESLPPAEFYPVYRFNP
HHCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]