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The map label for this gene is yciR [C]

Identifier: 119774102

GI number: 119774102

Start: 1165609

End: 1167651

Strand: Reverse

Name: yciR [C]

Synonym: Sama_0965

Alternate gene names: 119774102

Gene position: 1167651-1165609 (Counterclockwise)

Preceding gene: 119774114

Following gene: 119774089

Centisome position: 27.12

GC content: 51.84

Gene sequence:

>2043_bases
ATGGCGATTCGGTTCAAATCACTTACCTGGAAACAAACCAATCTCGTTGTCTTCACAGCGCTGTTTTTTGCTGTTGCGAT
TTTTATCATCGAGCTGGCTCTAATGGTAATGTCGACCCGGGAAGCCCTGACCTCCAGCCAGCAGGAACTGCTTGATTCGG
TTGAACAACCTGCAGCCAATGCCGTGTGGGCGTTAGACGACAACCTCGCCCGCCAAACTCTTGAAGGGGTGCTCAAAGTC
GAACATGTGGGCGCCTCGGTTATCGAACTGGACGATGGTTCGATGTTCGTCTCAGTCACCAACGGCAAGAACACCTACTC
AAATTTTTTTAATAGTTTAAGTGAAGAACTCTTCGGGGATTTACGGGAAATTTCCCGTCCTTTGTACCGCCCTTTTTACT
TTGAAGGCTCAAGACAACAGCAATTGATTGGTAGCCTGACCATCTTTTACGATACCCAGGAGCTGGCCAATACCCTGTTC
GGCCAGTTGAAAGTGGGTTTTTTGGCAACCCTGGCGCGAGCACTGTTTCTGACGCTGGTATTGTCCATCGTGTTTCACCG
CTTTCTCACTCAGCCGATTGCCCGAATAAGTGAAGCCATCGACAAGATTGAGCCCGAGTCACCCGATGAAAACCTGCTGC
CTATTTCAGACGCCCACAAGGACGACGAACTCGGCTTGGTAAGCACCAAGCTGAATCAAATTCTGCTGCAATTCGGCCAG
ACACAAAGCAAGCTGCGTAAGATGGCGACCAGAGACCCCCTCACCGGCCTGCCAAACCGTACCTTGCTGCTTGAGACCAT
AGCAGTGACCATACAGCGCGCCAGGGTTCACAAGCGTTCATTCACCCTGCTGTTTATCGACCTGGACCGTTTTAAAAACG
TCAACGACTCCCTGGGCCATGCTCTGGGCGATCAGTTTCTTGCCCGTATCGCGCGGCTACTGGAGCGGGTGGTGGGCGAT
AAAGGCACGGTTGCGCGCCTCGGTGGTGATGAGTTCGTGATCCTGGCGGACGAAATCCACTGCGCCGATATGGCAGCAGA
CTTTGTAGATAAGCTATTGGTCCAACTCAACAACCCAATCCAGCTTGGTGATCACTCCATCCACCCTGCTGCCTCTGTGG
GGATATCCCTCTACCCTGAAGATGGCAACAGTGCGGAGGACCTTATCCGACACGCCGATATCGCCATGTACAGCGCCAAG
GCCTCCGGCTCGAACCAGTGGGCCTTCTTTAAACAGCAAATGACAGAGCGTGCTGCCGTGCGCTTACGCACTGAAGCGTC
TTTGCACGATGCGCTGAAAAACGACGAGTTTGTCCTGCACTTTCAACCCAAGCTGGATTTGACCACAGGTAAAGTCATGG
GCTGCGAGGCACTTATCCGCTGGCAAAAAGATGGCCGCCTGATAAGCCCCATGTCGTTTATTCCAGTCGCCGAAGAAACC
GGCATTATCGTTCCCATAGGCCGCTGGGTATTGGAGCAAAGCTGTAAAACACTGCGCCACTGGCAAAAGCAGTACAACTT
TGCCATTCCCATCGCAGTCAATGTGGCATCACAGCAATTTGCCGATGCCAGCCTGGTGCCCGACATCAAGCAGATGGCGC
TACGCTATCAAATATCACCAGATTTACTGGAAATCGAAATTACCGAAACCTCATTGATGAGCGACGTCGAAACGGCTATC
AGCAAACTGGAGCAGCTTAAAAATGCCGGTTTTGGTATTGCAGTAGATGACTTTGGTACCGGCTACTCGTCGCTTTCTTA
CCTGCGACACCTGCCGATTACCACCATGAAGATTGACCGCTGCTTCGTGACCGACCTGCCCAACGACAGTGCCATCGCTT
CGACCATCCTGATGCTGGGGAAACAGCTGGATCTTCGTATTGTCGCGGAAGGTATTGAGAATGAACAGCAGCTGCAGTGG
TTAAAAACTGCCGGGTGCGGTATCGGTCAGGGCTTTTACTTCAGCCCGCCATTACCCATGGAAGAGTTTGAAGAGAAATA
CATTCGTTCACAGACAGCAGAAATACAAAACCTCCACGGTTAA

Upstream 100 bases:

>100_bases
CAAATCTTTAACTTTTCACTACAGTGGCTTTTATCGGACTGGCGAAATCCGTCCCTGAACGGACCTGCCCTAACGCTTCT
ATTAGCCCGGAAACTGATTG

Downstream 100 bases:

>100_bases
CCAATAAAAGCTGATCCCAAAAACGAAAAAAGGAGGCAAATGCCTCCTTTTTTCTTGCTTCGCTGGATTAGCGACGCAGA
CCCAGCTTCTGGATCAGAGC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 680; Mature: 679

Protein sequence:

>680_residues
MAIRFKSLTWKQTNLVVFTALFFAVAIFIIELALMVMSTREALTSSQQELLDSVEQPAANAVWALDDNLARQTLEGVLKV
EHVGASVIELDDGSMFVSVTNGKNTYSNFFNSLSEELFGDLREISRPLYRPFYFEGSRQQQLIGSLTIFYDTQELANTLF
GQLKVGFLATLARALFLTLVLSIVFHRFLTQPIARISEAIDKIEPESPDENLLPISDAHKDDELGLVSTKLNQILLQFGQ
TQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTLLFIDLDRFKNVNDSLGHALGDQFLARIARLLERVVGD
KGTVARLGGDEFVILADEIHCADMAADFVDKLLVQLNNPIQLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAK
ASGSNQWAFFKQQMTERAAVRLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQKDGRLISPMSFIPVAEET
GIIVPIGRWVLEQSCKTLRHWQKQYNFAIPIAVNVASQQFADASLVPDIKQMALRYQISPDLLEIEITETSLMSDVETAI
SKLEQLKNAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVTDLPNDSAIASTILMLGKQLDLRIVAEGIENEQQLQW
LKTAGCGIGQGFYFSPPLPMEEFEEKYIRSQTAEIQNLHG

Sequences:

>Translated_680_residues
MAIRFKSLTWKQTNLVVFTALFFAVAIFIIELALMVMSTREALTSSQQELLDSVEQPAANAVWALDDNLARQTLEGVLKV
EHVGASVIELDDGSMFVSVTNGKNTYSNFFNSLSEELFGDLREISRPLYRPFYFEGSRQQQLIGSLTIFYDTQELANTLF
GQLKVGFLATLARALFLTLVLSIVFHRFLTQPIARISEAIDKIEPESPDENLLPISDAHKDDELGLVSTKLNQILLQFGQ
TQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTLLFIDLDRFKNVNDSLGHALGDQFLARIARLLERVVGD
KGTVARLGGDEFVILADEIHCADMAADFVDKLLVQLNNPIQLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAK
ASGSNQWAFFKQQMTERAAVRLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQKDGRLISPMSFIPVAEET
GIIVPIGRWVLEQSCKTLRHWQKQYNFAIPIAVNVASQQFADASLVPDIKQMALRYQISPDLLEIEITETSLMSDVETAI
SKLEQLKNAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVTDLPNDSAIASTILMLGKQLDLRIVAEGIENEQQLQW
LKTAGCGIGQGFYFSPPLPMEEFEEKYIRSQTAEIQNLHG
>Mature_679_residues
AIRFKSLTWKQTNLVVFTALFFAVAIFIIELALMVMSTREALTSSQQELLDSVEQPAANAVWALDDNLARQTLEGVLKVE
HVGASVIELDDGSMFVSVTNGKNTYSNFFNSLSEELFGDLREISRPLYRPFYFEGSRQQQLIGSLTIFYDTQELANTLFG
QLKVGFLATLARALFLTLVLSIVFHRFLTQPIARISEAIDKIEPESPDENLLPISDAHKDDELGLVSTKLNQILLQFGQT
QSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTLLFIDLDRFKNVNDSLGHALGDQFLARIARLLERVVGDK
GTVARLGGDEFVILADEIHCADMAADFVDKLLVQLNNPIQLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAKA
SGSNQWAFFKQQMTERAAVRLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQKDGRLISPMSFIPVAEETG
IIVPIGRWVLEQSCKTLRHWQKQYNFAIPIAVNVASQQFADASLVPDIKQMALRYQISPDLLEIEITETSLMSDVETAIS
KLEQLKNAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVTDLPNDSAIASTILMLGKQLDLRIVAEGIENEQQLQWL
KTAGCGIGQGFYFSPPLPMEEFEEKYIRSQTAEIQNLHG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=36.9266055045872, Blast_Score=298, Evalue=1e-81,
Organism=Escherichia coli, GI226510982, Length=546, Percent_Identity=32.0512820512821, Blast_Score=296, Evalue=2e-81,
Organism=Escherichia coli, GI87081921, Length=444, Percent_Identity=33.1081081081081, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=37.1308016877637, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=32.1138211382114, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=34.0336134453782, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=32.295719844358, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=30.9236947791165, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1786507, Length=272, Percent_Identity=29.4117647058824, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=27.9835390946502, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI1788849, Length=264, Percent_Identity=30.6818181818182, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1788381, Length=355, Percent_Identity=25.9154929577465, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=30.2752293577982, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=31.8435754189944, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=34.9397590361446, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=28.735632183908, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787802, Length=195, Percent_Identity=28.7179487179487, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=33.1288343558282, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=31.9277108433735, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789650, Length=451, Percent_Identity=21.7294900221729, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=135, Percent_Identity=31.8518518518519, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=30.5882352941176, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=179, Percent_Identity=26.2569832402235, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75989; Mature: 75858

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRFKSLTWKQTNLVVFTALFFAVAIFIIELALMVMSTREALTSSQQELLDSVEQPAAN
CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AVWALDDNLARQTLEGVLKVEHVGASVIELDDGSMFVSVTNGKNTYSNFFNSLSEELFGD
EEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHH
LREISRPLYRPFYFEGSRQQQLIGSLTIFYDTQELANTLFGQLKVGFLATLARALFLTLV
HHHHHHHHCCCEEECCCHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIVFHRFLTQPIARISEAIDKIEPESPDENLLPISDAHKDDELGLVSTKLNQILLQFGQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTLLFIDLDRFKNVNDSLGH
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHCCCCCHHHHH
ALGDQFLARIARLLERVVGDKGTVARLGGDEFVILADEIHCADMAADFVDKLLVQLNNPI
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
QLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAKASGSNQWAFFKQQMTERAAV
CCCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHH
RLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQKDGRLISPMSFIPVAEET
HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHEECCCCCEECCCCCCCCCCCC
GIIVPIGRWVLEQSCKTLRHWQKQYNFAIPIAVNVASQQFADASLVPDIKQMALRYQISP
CEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHCCCCCCCHHHHHHHHHCCCC
DLLEIEITETSLMSDVETAISKLEQLKNAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDR
CEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECE
CFVTDLPNDSAIASTILMLGKQLDLRIVAEGIENEQQLQWLKTAGCGIGQGFYFSPPLPM
EEEECCCCCHHHHHHHHHHCCCCCHHHEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH
EEFEEKYIRSQTAEIQNLHG
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIRFKSLTWKQTNLVVFTALFFAVAIFIIELALMVMSTREALTSSQQELLDSVEQPAAN
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AVWALDDNLARQTLEGVLKVEHVGASVIELDDGSMFVSVTNGKNTYSNFFNSLSEELFGD
EEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHH
LREISRPLYRPFYFEGSRQQQLIGSLTIFYDTQELANTLFGQLKVGFLATLARALFLTLV
HHHHHHHHCCCEEECCCHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIVFHRFLTQPIARISEAIDKIEPESPDENLLPISDAHKDDELGLVSTKLNQILLQFGQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTLLFIDLDRFKNVNDSLGH
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHCCCCCHHHHH
ALGDQFLARIARLLERVVGDKGTVARLGGDEFVILADEIHCADMAADFVDKLLVQLNNPI
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
QLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAKASGSNQWAFFKQQMTERAAV
CCCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHH
RLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQKDGRLISPMSFIPVAEET
HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHEECCCCCEECCCCCCCCCCCC
GIIVPIGRWVLEQSCKTLRHWQKQYNFAIPIAVNVASQQFADASLVPDIKQMALRYQISP
CEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHCCCCCCCHHHHHHHHHCCCC
DLLEIEITETSLMSDVETAISKLEQLKNAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDR
CEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECE
CFVTDLPNDSAIASTILMLGKQLDLRIVAEGIENEQQLQWLKTAGCGIGQGFYFSPPLPM
EEEECCCCCHHHHHHHHHHCCCCCHHHEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH
EEFEEKYIRSQTAEIQNLHG
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]