Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is yqeY [H]

Identifier: 119773962

GI number: 119773962

Start: 1010631

End: 1011074

Strand: Reverse

Name: yqeY [H]

Synonym: Sama_0825

Alternate gene names: 119773962

Gene position: 1011074-1010631 (Counterclockwise)

Preceding gene: 119773963

Following gene: 119773961

Centisome position: 23.48

GC content: 52.25

Gene sequence:

>444_bases
ATGAACCTGACAGAACAGCTTAAAGACGAAATGAAAAAGGCCCTTGTCGCTAAAGACAAGGTTCGCCTCGGAACTATCCG
TCTGGCTCTGGCCGCCATCAAGCAGATCGAAGTGGACACACGCGAAACGCTGAATGATGAGCAAGTGCTTGCTGTCCTGA
CCAAAATGGTGAAGCAACGTCGCGATTCGATTAGCCAATATGAGGCTGCCGGTCGTAACGAACTTGCTGACGCAGAAGCG
GCGGAAATTTCGGTTATCGAAACTTTCCTGCCAGCCCCACTGAGCGAAGCTGAAATCGCTGCTCTCATTGAGGCCACCAT
TGCTGAAGTAGGTGCTGCCTCCATTGCGGACATGGGTAAAGTAATGGGAGCACTGAAGCCGAAAGTTCAGGGCCGTGCAG
ATCTGGGTGCCATTGGCCAACAGATCCGCGCCAAACTGCAATAA

Upstream 100 bases:

>100_bases
AACTACTGCCCGTAAGCGCGCCAAGGCCGCTGCGGTTAAGCGTCTGGCCAAGAAGCTTTCTCGCGAAAACGCACGTCGCG
TACGTTTATACTAATCCCTT

Downstream 100 bases:

>100_bases
TCGACTTTTGTGTATGAACAAGCCGTGCAATTGCGCGGCTTGTTTGTTTAACTGAGCTTTTAGGAAATTGAAGTAAGCAA
CGTGGCAATACCTCGTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MNLTEQLKDEMKKALVAKDKVRLGTIRLALAAIKQIEVDTRETLNDEQVLAVLTKMVKQRRDSISQYEAAGRNELADAEA
AEISVIETFLPAPLSEAEIAALIEATIAEVGAASIADMGKVMGALKPKVQGRADLGAIGQQIRAKLQ

Sequences:

>Translated_147_residues
MNLTEQLKDEMKKALVAKDKVRLGTIRLALAAIKQIEVDTRETLNDEQVLAVLTKMVKQRRDSISQYEAAGRNELADAEA
AEISVIETFLPAPLSEAEIAALIEATIAEVGAASIADMGKVMGALKPKVQGRADLGAIGQQIRAKLQ
>Mature_147_residues
MNLTEQLKDEMKKALVAKDKVRLGTIRLALAAIKQIEVDTRETLNDEQVLAVLTKMVKQRRDSISQYEAAGRNELADAEA
AEISVIETFLPAPLSEAEIAALIEATIAEVGAASIADMGKVMGALKPKVQGRADLGAIGQQIRAKLQ

Specific function: Unknown

COG id: COG1610

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003789
- InterPro:   IPR023168
- InterPro:   IPR019004 [H]

Pfam domain/function: PF09424 YqeY [H]

EC number: NA

Molecular weight: Translated: 15824; Mature: 15824

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTEQLKDEMKKALVAKDKVRLGTIRLALAAIKQIEVDTRETLNDEQVLAVLTKMVKQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHH
RDSISQYEAAGRNELADAEAAEISVIETFLPAPLSEAEIAALIEATIAEVGAASIADMGK
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMGALKPKVQGRADLGAIGQQIRAKLQ
HHHHHCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLTEQLKDEMKKALVAKDKVRLGTIRLALAAIKQIEVDTRETLNDEQVLAVLTKMVKQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHH
RDSISQYEAAGRNELADAEAAEISVIETFLPAPLSEAEIAALIEATIAEVGAASIADMGK
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMGALKPKVQGRADLGAIGQQIRAKLQ
HHHHHCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 9023197 [H]