| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773939
Identifier: 119773939
GI number: 119773939
Start: 985300
End: 986781
Strand: Reverse
Name: 119773939
Synonym: Sama_0802
Alternate gene names: NA
Gene position: 986781-985300 (Counterclockwise)
Preceding gene: 119773942
Following gene: 119773938
Centisome position: 22.92
GC content: 57.02
Gene sequence:
>1482_bases ATGACCACAAGTTACCTAAAGCTCAAGGGCCATTTTGCCCAGATTTCCCACTTTGAACATTTCAGCGCTCTGGGCGACTG GGATCAGGCCACCATGATGCCCATGGGCGGCAGCGAAGGCCGCAGCGATGCCATGGCAACACTGGCAGGTCATATCCATG GGCTTCGCACTGCCCCCTGGTTGCTGGACGAAATCAATAATGCCGAGTCTGAGCCCCTCACAGCTCGGGAGCGCGCCAAC CTGCGGGAGATGAAATACCAGTGCCAGCAGTCAATCGCCGTACCCCAGGCGTTGGTCGAAGCCAAGACCAAGGCCGCCTA TCAGTGCGAAAATGCCTGGCGCGAGCAGCGTAAAAACAATGACTGGTCAGGCTTTAAACCCAATCTCGAAAACGTGATGG CGCTGGTACGGGAAGAAGCCGGTCACCGCGCAGCGCTCACTGGGCTCTCACCCTACGATACCTTGCTGGATAAATTTGAA CCCGGCATGAGAGCCGCCACACTTGAAACCACCTTCGCCGGTCTTCGCAGCACGCTTCCCAGTCTTATCCAGCAGATCCT CAACAAACAGGCCAGCGAACCGGTTATCCAACTCGACGGGACTTTCGACATAGGCGCCCAGGAGAAGATTGGCCGTGAAC TCATGACACTGCTGGGGTTTGACTTCAATCAGGGGCGTCTGGATGTGTCCAGCCACCCCTTCTGCGGTGGAGTGCCGGGC GACGTGCGACTCACCACCCGCTACAGGGAAGATGACTTTACCGGCGCCCTGCTTGGCATCATCCACGAAACCGGCCATGC CCGCTATGAACAGGGCCTGCCATTGGCGCTTCGGGGCCAACCGGCCGGGCTTGCTCGCTCCATGGGTATCCATGAGAGCC AGAGTCTGTTTTTTGAAATGCAGCTGGCTGCCAGCAAACCTTTTATCGAGCTCATCACCCCCATCATAAACCGTAATCTT GGGCGGGATTTCAGCGCCGATGCTCTGGTTAACCTCTATACCCGGGTTAAGCCGGGTCTCATCCGGGTTGATGCCGACGA AGTCACCTACCCTTGCCATATCCTGCTTCGATTCGACGCCGAAAAGGCATTGATGGACGGCTCACTTACGGTGGCCGACT TGCCCGACTTCTGGTCAGCGGGCATGCAGGAACTGCTGGGGATTAATACCGATGGCGACTACCGAAATGGCTGCATGCAG GACATACACTGGACTCTGGGTGAACTCGGGTATTTCCCGAGCTACACCCTGGGGGCCATGTATGCCGCACAGCTGCGCTT TGCCATGGAAAAAACTCTGGGGCCACTGGAGCAAACCATTGGCCAGGGGCGCCTCGCCGAGGTTTTTGCCTGGCTTGAGC AACATATCTGGTCACTGGGTTCACTCATGGATACCGACAGCCTGATTAAGGCTGCCACCGGTGAATCACTCAACTTCCAC TATCTTGAGCAGCACCTGCGTCAACGCTATCTGGGCGAATAA
Upstream 100 bases:
>100_bases AATCCGAGCATATCAAAGCGTGAGTCTTTGCCAAGCATTTTTACCCGCTTTCGGGGCTTATCCGCTAAGATAGGCGCAAA CCCACTAAGCTCCCCATCCC
Downstream 100 bases:
>100_bases CCCAGTCTCGGGTATAATTGCGCCCTTTGTGATTTGAACAGGCAGTAAGCAAAGGGCGTACCATGCAACTCAGGGCGATT CAGGCCAACGATTGGCAAGC
Product: carboxypeptidase Taq
Products: NA
Alternate protein names: Carboxypeptidase Taq [H]
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MTTSYLKLKGHFAQISHFEHFSALGDWDQATMMPMGGSEGRSDAMATLAGHIHGLRTAPWLLDEINNAESEPLTARERAN LREMKYQCQQSIAVPQALVEAKTKAAYQCENAWREQRKNNDWSGFKPNLENVMALVREEAGHRAALTGLSPYDTLLDKFE PGMRAATLETTFAGLRSTLPSLIQQILNKQASEPVIQLDGTFDIGAQEKIGRELMTLLGFDFNQGRLDVSSHPFCGGVPG DVRLTTRYREDDFTGALLGIIHETGHARYEQGLPLALRGQPAGLARSMGIHESQSLFFEMQLAASKPFIELITPIINRNL GRDFSADALVNLYTRVKPGLIRVDADEVTYPCHILLRFDAEKALMDGSLTVADLPDFWSAGMQELLGINTDGDYRNGCMQ DIHWTLGELGYFPSYTLGAMYAAQLRFAMEKTLGPLEQTIGQGRLAEVFAWLEQHIWSLGSLMDTDSLIKAATGESLNFH YLEQHLRQRYLGE
Sequences:
>Translated_493_residues MTTSYLKLKGHFAQISHFEHFSALGDWDQATMMPMGGSEGRSDAMATLAGHIHGLRTAPWLLDEINNAESEPLTARERAN LREMKYQCQQSIAVPQALVEAKTKAAYQCENAWREQRKNNDWSGFKPNLENVMALVREEAGHRAALTGLSPYDTLLDKFE PGMRAATLETTFAGLRSTLPSLIQQILNKQASEPVIQLDGTFDIGAQEKIGRELMTLLGFDFNQGRLDVSSHPFCGGVPG DVRLTTRYREDDFTGALLGIIHETGHARYEQGLPLALRGQPAGLARSMGIHESQSLFFEMQLAASKPFIELITPIINRNL GRDFSADALVNLYTRVKPGLIRVDADEVTYPCHILLRFDAEKALMDGSLTVADLPDFWSAGMQELLGINTDGDYRNGCMQ DIHWTLGELGYFPSYTLGAMYAAQLRFAMEKTLGPLEQTIGQGRLAEVFAWLEQHIWSLGSLMDTDSLIKAATGESLNFH YLEQHLRQRYLGE >Mature_492_residues TTSYLKLKGHFAQISHFEHFSALGDWDQATMMPMGGSEGRSDAMATLAGHIHGLRTAPWLLDEINNAESEPLTARERANL REMKYQCQQSIAVPQALVEAKTKAAYQCENAWREQRKNNDWSGFKPNLENVMALVREEAGHRAALTGLSPYDTLLDKFEP GMRAATLETTFAGLRSTLPSLIQQILNKQASEPVIQLDGTFDIGAQEKIGRELMTLLGFDFNQGRLDVSSHPFCGGVPGD VRLTTRYREDDFTGALLGIIHETGHARYEQGLPLALRGQPAGLARSMGIHESQSLFFEMQLAASKPFIELITPIINRNLG RDFSADALVNLYTRVKPGLIRVDADEVTYPCHILLRFDAEKALMDGSLTVADLPDFWSAGMQELLGINTDGDYRNGCMQD IHWTLGELGYFPSYTLGAMYAAQLRFAMEKTLGPLEQTIGQGRLAEVFAWLEQHIWSLGSLMDTDSLIKAATGESLNFHY LEQHLRQRYLGE
Specific function: Releases amino acids sequentially from the C-terminus with a broad substrate specificity (except for proline) [H]
COG id: COG2317
COG function: function code E; Zn-dependent carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001333 [H]
Pfam domain/function: PF02074 Peptidase_M32 [H]
EC number: =3.4.17.19 [H]
Molecular weight: Translated: 54962; Mature: 54831
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSYLKLKGHFAQISHFEHFSALGDWDQATMMPMGGSEGRSDAMATLAGHIHGLRTAPW CCCCEEEECCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCHH LLDEINNAESEPLTARERANLREMKYQCQQSIAVPQALVEAKTKAAYQCENAWREQRKNN HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DWSGFKPNLENVMALVREEAGHRAALTGLSPYDTLLDKFEPGMRAATLETTFAGLRSTLP CCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SLIQQILNKQASEPVIQLDGTFDIGAQEKIGRELMTLLGFDFNQGRLDVSSHPFCGGVPG HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC DVRLTTRYREDDFTGALLGIIHETGHARYEQGLPLALRGQPAGLARSMGIHESQSLFFEM CEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCEEECCCCCHHHHHCCCCCCHHHEEEE QLAASKPFIELITPIINRNLGRDFSADALVNLYTRVKPGLIRVDADEVTYPCHILLRFDA EHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECH EKALMDGSLTVADLPDFWSAGMQELLGINTDGDYRNGCMQDIHWTLGELGYFPSYTLGAM HHHHHCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH YAAQLRFAMEKTLGPLEQTIGQGRLAEVFAWLEQHIWSLGSLMDTDSLIKAATGESLNFH HHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHH YLEQHLRQRYLGE HHHHHHHHHHCCC >Mature Secondary Structure TTSYLKLKGHFAQISHFEHFSALGDWDQATMMPMGGSEGRSDAMATLAGHIHGLRTAPW CCCEEEECCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCHH LLDEINNAESEPLTARERANLREMKYQCQQSIAVPQALVEAKTKAAYQCENAWREQRKNN HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DWSGFKPNLENVMALVREEAGHRAALTGLSPYDTLLDKFEPGMRAATLETTFAGLRSTLP CCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SLIQQILNKQASEPVIQLDGTFDIGAQEKIGRELMTLLGFDFNQGRLDVSSHPFCGGVPG HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC DVRLTTRYREDDFTGALLGIIHETGHARYEQGLPLALRGQPAGLARSMGIHESQSLFFEM CEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCEEECCCCCHHHHHCCCCCCHHHEEEE QLAASKPFIELITPIINRNLGRDFSADALVNLYTRVKPGLIRVDADEVTYPCHILLRFDA EHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECH EKALMDGSLTVADLPDFWSAGMQELLGINTDGDYRNGCMQDIHWTLGELGYFPSYTLGAM HHHHHCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH YAAQLRFAMEKTLGPLEQTIGQGRLAEVFAWLEQHIWSLGSLMDTDSLIKAATGESLNFH HHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHH YLEQHLRQRYLGE HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7765282; 1369078 [H]