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The map label for this gene is ycdC [C]

Identifier: 119773929

GI number: 119773929

Start: 976548

End: 977186

Strand: Reverse

Name: ycdC [C]

Synonym: Sama_0792

Alternate gene names: 119773929

Gene position: 977186-976548 (Counterclockwise)

Preceding gene: 119773932

Following gene: 119773928

Centisome position: 22.69

GC content: 55.24

Gene sequence:

>639_bases
TTGAGTGGACACGACAAGGTGCAAACACCAAAACGAAATCGCAGCGAAATCAAGCGTGAAGCCATAATGCTCGCCGCCAA
GGAACTGTTTCAGACCCAGGGCGTACAGGGCACCAGCATGGATGAGCTGGCGCGGGTGGCTGAGGTTTCCAAGCGCACCG
TGTATAACCACTTCGCCAGCAAAGAGGCGCTGGTACTGGAGCTGGTTGCCGAACTGTGGCAATCGGCCAATGCCGATATC
AAGGTATGTTTTGTCAAAGACCACCCCGTGCATCCTCAGCTCCTTGAGGTACTTAACGCCGAAATCGCCATCATGACCAA
CCCGGATTATCTCGAACTGGTGCGGGTCGCCATTGGCCACTTTATGTTTCATCCCGGTGCGCTTAAATGTGAGCTGGAAA
GCCGGGTCACCCACGAGTCGGCGCTGCGCCGCTGGCTGTCTGAAGGCATTAAATCAGGCGCCCTGCCCAATCTGGATGTG
GATGAAGTGGAATGTACGCTGCACGGCATGATTAAGGGCGTGTGTTTTTGGCCGTCGCTGATGCAGCTGTGCGAACCCCT
TCCCAAGGGTGAGCTTGAGCGCCTTGGTGCCGATATCGCCGCCTTTTTTGAGTTCAAATACTTAAGCGGCCGCAACTAA

Upstream 100 bases:

>100_bases
ATAGACGATACTGGACATCAACAAGTAAACTACACTGTGCAGTTTACTTATGAATTTGGAAAAGTAAACTGCTCAGTGTA
AAATTCAGCCATCTGATATC

Downstream 100 bases:

>100_bases
TCAGCCAGCAAGCAGCCATTAACGTCGGCGCAGCGCGCCAATTTGTCCGCCCGGCTTTATGTCGGGCGCCCAACTAAGTT
AGAATCCGGACTTATTGTTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSGHDKVQTPKRNRSEIKREAIMLAAKELFQTQGVQGTSMDELARVAEVSKRTVYNHFASKEALVLELVAELWQSANADI
KVCFVKDHPVHPQLLEVLNAEIAIMTNPDYLELVRVAIGHFMFHPGALKCELESRVTHESALRRWLSEGIKSGALPNLDV
DEVECTLHGMIKGVCFWPSLMQLCEPLPKGELERLGADIAAFFEFKYLSGRN

Sequences:

>Translated_212_residues
MSGHDKVQTPKRNRSEIKREAIMLAAKELFQTQGVQGTSMDELARVAEVSKRTVYNHFASKEALVLELVAELWQSANADI
KVCFVKDHPVHPQLLEVLNAEIAIMTNPDYLELVRVAIGHFMFHPGALKCELESRVTHESALRRWLSEGIKSGALPNLDV
DEVECTLHGMIKGVCFWPSLMQLCEPLPKGELERLGADIAAFFEFKYLSGRN
>Mature_211_residues
SGHDKVQTPKRNRSEIKREAIMLAAKELFQTQGVQGTSMDELARVAEVSKRTVYNHFASKEALVLELVAELWQSANADIK
VCFVKDHPVHPQLLEVLNAEIAIMTNPDYLELVRVAIGHFMFHPGALKCELESRVTHESALRRWLSEGIKSGALPNLDVD
EVECTLHGMIKGVCFWPSLMQLCEPLPKGELERLGADIAAFFEFKYLSGRN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23829; Mature: 23698

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHDKVQTPKRNRSEIKREAIMLAAKELFQTQGVQGTSMDELARVAEVSKRTVYNHFAS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
KEALVLELVAELWQSANADIKVCFVKDHPVHPQLLEVLNAEIAIMTNPDYLELVRVAIGH
HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHH
FMFHPGALKCELESRVTHESALRRWLSEGIKSGALPNLDVDEVECTLHGMIKGVCFWPSL
HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MQLCEPLPKGELERLGADIAAFFEFKYLSGRN
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGHDKVQTPKRNRSEIKREAIMLAAKELFQTQGVQGTSMDELARVAEVSKRTVYNHFAS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
KEALVLELVAELWQSANADIKVCFVKDHPVHPQLLEVLNAEIAIMTNPDYLELVRVAIGH
HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHH
FMFHPGALKCELESRVTHESALRRWLSEGIKSGALPNLDVDEVECTLHGMIKGVCFWPSL
HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MQLCEPLPKGELERLGADIAAFFEFKYLSGRN
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA