| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773875
Identifier: 119773875
GI number: 119773875
Start: 904781
End: 906094
Strand: Reverse
Name: 119773875
Synonym: Sama_0737
Alternate gene names: NA
Gene position: 906094-904781 (Counterclockwise)
Preceding gene: 119773879
Following gene: 119773872
Centisome position: 21.04
GC content: 54.79
Gene sequence:
>1314_bases ATGACATCAGGAATTCAGACAAGCTTTCAGCAAAGTCGGCCTCGCAGCCTGCTCCTTGGTCTGTGGCTGGCGATTGCCGC CCCAATAGTGTGTGCACAGACAGAGACATCCGCCGCCGATAATCTTCCCATCGCCGCCAACGCCACTGCGCTGAGCTACG GCACTGCGTATCAGGCCCCTTCCCGTCATTTTGGTGAAGACAGACGCTTCATGGTAGCGCTGCCGGAGCGCTATCACGCC GGTGAACGCCGCTATCCGGTGCTTTATGTCATCGATGGCGACTTTCAGTTTCGCCATGTCTCAGCCGCAGTGAATAACCT CAGTCGCATGGGCAAAATCCCCCCCATGATAGTGGTGGGTGTGGCAACCCAGGGACAGGCAGACTATATCAAATCCACCA CCTGGGCCTCCGAGCGGGAAGGTGATGAGTTTGGCGGCGCCGACACCCTGATGGCCTACCTGAAAGATGAACTCTTGCCC CTGATTGACGGGAAGTTTCGCACCAGCGGCAAAAATGCCATCGCGGGCTATTCTCTGGGCGGCCTCTTTACCCTCGAGGC CATGATGGCCGATGACACGCCCTTTTCCGCTTTTTTGGCCATGAGCCCCAGCGCCTGGTACGACGATTACGGTATCAACG ACCGCATGGCGGCTTACATCAAAAAGCACAGGACAATGCCACCGCTGTTTTTATCGGTCGCCAACGAAGAGGGCATGGGC GTGCAGCCGCTGTTCAAGCTGATTGAAACGTCGATGCCAAACTCCGGAGTGGTATTTAAGCACTACCCGGATGAAACCCA CTACACCACCGCCATGCCTGCGCTTTTGGATGCCCTGGCGTATCTGGCCCCGGCCTACTACACCGACCTGGACGTGCTGC TGCCAATGGCCAACTACCAGGATGTGTTAAACCATTTCGAAGCCAAAGGCAGCCAATGGGCCGGATTTCGCTTCGAGTGG TTACAGTCCTACTACCTTGCCAAATATTTTTTCATTACCAAACAGCAAGATAAAATAGAATCCTTCCTCGATGATGCACA AAAACGCTTCCCCGAATCCAACACAGAACTGTGCGTTGCCATGGCCAAAGCCTATTTGAAAAATCAGCAACCAAAGAATG CGGTAAACGTGCTGATGCGCGCTGAAAAGGAAGGCCAGCAAAGCGCCGATTGGCTGGCACAAATGAGCGAAGCCCAAAAA GCCATGGGCGCCATAAAAGAAGCCGAGGCCCTCCACAGCCGTGCAATGGCGCTGGCGAAAGCACAGGGGCTCGAAAGCTG GGAATATTGGGAACTTAACCCGAGACGTTTTTAA
Upstream 100 bases:
>100_bases TCTATTACAAGGCGAAAAAGCCTGCATTCTTCACTTTTGCAGCCAACTCTGTCAGGGTTAAAGACGGGAAAAACAATGCT AAAAATAACAGGGACCTCAG
Downstream 100 bases:
>100_bases CTTCCAGCAGGGCCAAAGGGCGAAATGAGCATCAAAAAAGGCGCCTGTGGCGCCTTTCTCATTAAGCTTAACGGCTGACC CTGACCTCAGGGGAGTTCAT
Product: putative esterase
Products: NA
Alternate protein names: Alpha/Beta Superfamily Hydrolase; IroE Protein; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Alpha/Beta Fold Family Hydrolase; Ferric-Enterobactin Hydrolase; TPR Repeat-Containing Protein; Iron-Chelator Esterase; Exported Esterase; Esterase Family Protein
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MTSGIQTSFQQSRPRSLLLGLWLAIAAPIVCAQTETSAADNLPIAANATALSYGTAYQAPSRHFGEDRRFMVALPERYHA GERRYPVLYVIDGDFQFRHVSAAVNNLSRMGKIPPMIVVGVATQGQADYIKSTTWASEREGDEFGGADTLMAYLKDELLP LIDGKFRTSGKNAIAGYSLGGLFTLEAMMADDTPFSAFLAMSPSAWYDDYGINDRMAAYIKKHRTMPPLFLSVANEEGMG VQPLFKLIETSMPNSGVVFKHYPDETHYTTAMPALLDALAYLAPAYYTDLDVLLPMANYQDVLNHFEAKGSQWAGFRFEW LQSYYLAKYFFITKQQDKIESFLDDAQKRFPESNTELCVAMAKAYLKNQQPKNAVNVLMRAEKEGQQSADWLAQMSEAQK AMGAIKEAEALHSRAMALAKAQGLESWEYWELNPRRF
Sequences:
>Translated_437_residues MTSGIQTSFQQSRPRSLLLGLWLAIAAPIVCAQTETSAADNLPIAANATALSYGTAYQAPSRHFGEDRRFMVALPERYHA GERRYPVLYVIDGDFQFRHVSAAVNNLSRMGKIPPMIVVGVATQGQADYIKSTTWASEREGDEFGGADTLMAYLKDELLP LIDGKFRTSGKNAIAGYSLGGLFTLEAMMADDTPFSAFLAMSPSAWYDDYGINDRMAAYIKKHRTMPPLFLSVANEEGMG VQPLFKLIETSMPNSGVVFKHYPDETHYTTAMPALLDALAYLAPAYYTDLDVLLPMANYQDVLNHFEAKGSQWAGFRFEW LQSYYLAKYFFITKQQDKIESFLDDAQKRFPESNTELCVAMAKAYLKNQQPKNAVNVLMRAEKEGQQSADWLAQMSEAQK AMGAIKEAEALHSRAMALAKAQGLESWEYWELNPRRF >Mature_436_residues TSGIQTSFQQSRPRSLLLGLWLAIAAPIVCAQTETSAADNLPIAANATALSYGTAYQAPSRHFGEDRRFMVALPERYHAG ERRYPVLYVIDGDFQFRHVSAAVNNLSRMGKIPPMIVVGVATQGQADYIKSTTWASEREGDEFGGADTLMAYLKDELLPL IDGKFRTSGKNAIAGYSLGGLFTLEAMMADDTPFSAFLAMSPSAWYDDYGINDRMAAYIKKHRTMPPLFLSVANEEGMGV QPLFKLIETSMPNSGVVFKHYPDETHYTTAMPALLDALAYLAPAYYTDLDVLLPMANYQDVLNHFEAKGSQWAGFRFEWL QSYYLAKYFFITKQQDKIESFLDDAQKRFPESNTELCVAMAKAYLKNQQPKNAVNVLMRAEKEGQQSADWLAQMSEAQKA MGAIKEAEALHSRAMALAKAQGLESWEYWELNPRRF
Specific function: Unknown
COG id: COG2819
COG function: function code R; Predicted hydrolase of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48899; Mature: 48768
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSGIQTSFQQSRPRSLLLGLWLAIAAPIVCAQTETSAADNLPIAANATALSYGTAYQAP CCCCCCCHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCEECCCCEEECCCCCCCC SRHFGEDRRFMVALPERYHAGERRYPVLYVIDGDFQFRHVSAAVNNLSRMGKIPPMIVVG CHHCCCCCEEEEECCHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEE VATQGQADYIKSTTWASEREGDEFGGADTLMAYLKDELLPLIDGKFRTSGKNAIAGYSLG ECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GLFTLEAMMADDTPFSAFLAMSPSAWYDDYGINDRMAAYIKKHRTMPPLFLSVANEEGMG HHHHHHHHHCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCC VQPLFKLIETSMPNSGVVFKHYPDETHYTTAMPALLDALAYLAPAYYTDLDVLLPMANYQ HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHH DVLNHFEAKGSQWAGFRFEWLQSYYLAKYFFITKQQDKIESFLDDAQKRFPESNTELCVA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCHHHHHH MAKAYLKNQQPKNAVNVLMRAEKEGQQSADWLAQMSEAQKAMGAIKEAEALHSRAMALAK HHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQGLESWEYWELNPRRF HHCCCCCCEECCCCCCC >Mature Secondary Structure TSGIQTSFQQSRPRSLLLGLWLAIAAPIVCAQTETSAADNLPIAANATALSYGTAYQAP CCCCCCHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCEECCCCEEECCCCCCCC SRHFGEDRRFMVALPERYHAGERRYPVLYVIDGDFQFRHVSAAVNNLSRMGKIPPMIVVG CHHCCCCCEEEEECCHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEE VATQGQADYIKSTTWASEREGDEFGGADTLMAYLKDELLPLIDGKFRTSGKNAIAGYSLG ECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GLFTLEAMMADDTPFSAFLAMSPSAWYDDYGINDRMAAYIKKHRTMPPLFLSVANEEGMG HHHHHHHHHCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCC VQPLFKLIETSMPNSGVVFKHYPDETHYTTAMPALLDALAYLAPAYYTDLDVLLPMANYQ HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHH DVLNHFEAKGSQWAGFRFEWLQSYYLAKYFFITKQQDKIESFLDDAQKRFPESNTELCVA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCHHHHHH MAKAYLKNQQPKNAVNVLMRAEKEGQQSADWLAQMSEAQKAMGAIKEAEALHSRAMALAK HHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQGLESWEYWELNPRRF HHCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA