Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773861

Identifier: 119773861

GI number: 119773861

Start: 887421

End: 888908

Strand: Reverse

Name: 119773861

Synonym: Sama_0723

Alternate gene names: NA

Gene position: 888908-887421 (Counterclockwise)

Preceding gene: 119773862

Following gene: 119773860

Centisome position: 20.64

GC content: 58.13

Gene sequence:

>1488_bases
ATGAGCGCCAGAAGACACCTGCTTTTGGCCGTGCTGGGCTCAGGCTTGCTGGCTGGCTGCCAACATAAGGCGCTGGAGTA
CGAACCCATCGCGCCTCCGGTCCTTGCCGACTTCAGCACGCCTGCGCTGCTCGCCATGCCCCTTGCCAGCAATGCTTCCG
ATAACCGAGTTACCAACGAGAATGCCACAGCGACTGGCACGGTTCCACACCAGGGGATTCCCTTTCCTGTGCTGCATCCT
GCCGTCAACCCACCGCGCCCGGCAACTGGTATGGCCATGGCAGATGACAAAGGAATGCTGAGCTTTCACCATGACGAACG
GCTTGAGGCGACACACCTTGTTATCACCACAGCAGGGGTTATTACTTCTGGCCCTCTCATCGCCCGGCAAATGCAGGCGC
AGCTGCGCCTTGATGCCTTGGCGGGGGAGCGCTGCGCCGAAACCCTGAGCGTCATTGCAAGGCCACACAGTGTGGTGTTT
TCCAGTCGCTGCGATGGGCCAATGGCCCTGCTGATGAGGGTAAGGAGCCTTATCGAGCGCTACGGTGCCCTTGATAAGGA
CAACAGCGACAGGGTGATACGGGAAAGTCAGCTGGCAAAACACATAGAGGCGTTCAGTGGCAGGGATATAGACCGGCTCT
GGGCTCAGGTTGTACTGGGTAAATCCCACCCTTATTTATCGCTTTATAACACCCCGGAATCAAAGCGCCCCGACCTTGCT
GATGTAGTAAAGGCATTGGCAGCCCAGGGGCGCTGGCATCTTATCGGTGCCAGGGCCCCTGAGTCTTTGACGAGCGCAGT
CAAGCCTGCTTTTATCGCTTCTCCATATGGTATCGGCGAGTCGGTGTCTGAACGGCGCCAAAACACGGGGAAAGTGCTCT
ACCTGCTTCATGCGCCCGGGCAAGTGCAGTCACAGGTCAGGGTTGGCTACTCACTTCCCCCCACCGGCAACAATGCCCCC
TGCAAAGCCACGGCAGCGCTGCTTGGTCGCAGCCAGGCCGGGCGCCTGTTTTACGATCTTCGCAGTCGCCGGGGCCTGAC
ATACGGCGTGTATGGCAGCTGTATCGATAATCCTCTGAGCCGCACCCTGAAATTCTACGGCTCAAGCGCCACTGAAAGTA
CCGGCGCCTTTGTCCGGGGCATATTGGATCATCTGAGCCTACTTGGCAGCACTGCGCCAAGCGCAGCCGAGCTACAGGCG
CTGGACAGCTACCTTATCGGTCAGTACAAGGTCAACGCCGACACAGAAGGGTCCGCTGTGGGAGAGTGGCTCGCTATGCT
CGAACAAGCAGATTTTGCCGGTGACGCCTCCCTGCCAGAGTACTTGCCTTCCCCCTTGGTAAGGGCATCAGACATGGGCA
ACTTCCCTGCTCAGTATTTACGCAATCCACCCTGGGTTGTTATCAAAGGTGATGCCACATTACTCTTGCCTGACCTGCAG
CAAAAGCTCCCCGACTGGGAGATAAAACGGCTCGATAAGCTGCCCTGA

Upstream 100 bases:

>100_bases
TCCGGCTCGATTTAAAACCGGCATGGCACACCCGGCTTGGAAAAGGTCTGCTGGAATGGCTCCCCGAAAGCTGGGCCGAA
GGCCTTGAGGAACTTGCATT

Downstream 100 bases:

>100_bases
AAACCCTTCTATTTTCACATCCGCGTTTAAAACATCAGGTCACTGACGGCAAAAAATGCACCAAAACACCCATGATAAAC
AGATTAAAAGCCGCTATTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Zn-Dependent Peptidase

Number of amino acids: Translated: 495; Mature: 494

Protein sequence:

>495_residues
MSARRHLLLAVLGSGLLAGCQHKALEYEPIAPPVLADFSTPALLAMPLASNASDNRVTNENATATGTVPHQGIPFPVLHP
AVNPPRPATGMAMADDKGMLSFHHDERLEATHLVITTAGVITSGPLIARQMQAQLRLDALAGERCAETLSVIARPHSVVF
SSRCDGPMALLMRVRSLIERYGALDKDNSDRVIRESQLAKHIEAFSGRDIDRLWAQVVLGKSHPYLSLYNTPESKRPDLA
DVVKALAAQGRWHLIGARAPESLTSAVKPAFIASPYGIGESVSERRQNTGKVLYLLHAPGQVQSQVRVGYSLPPTGNNAP
CKATAALLGRSQAGRLFYDLRSRRGLTYGVYGSCIDNPLSRTLKFYGSSATESTGAFVRGILDHLSLLGSTAPSAAELQA
LDSYLIGQYKVNADTEGSAVGEWLAMLEQADFAGDASLPEYLPSPLVRASDMGNFPAQYLRNPPWVVIKGDATLLLPDLQ
QKLPDWEIKRLDKLP

Sequences:

>Translated_495_residues
MSARRHLLLAVLGSGLLAGCQHKALEYEPIAPPVLADFSTPALLAMPLASNASDNRVTNENATATGTVPHQGIPFPVLHP
AVNPPRPATGMAMADDKGMLSFHHDERLEATHLVITTAGVITSGPLIARQMQAQLRLDALAGERCAETLSVIARPHSVVF
SSRCDGPMALLMRVRSLIERYGALDKDNSDRVIRESQLAKHIEAFSGRDIDRLWAQVVLGKSHPYLSLYNTPESKRPDLA
DVVKALAAQGRWHLIGARAPESLTSAVKPAFIASPYGIGESVSERRQNTGKVLYLLHAPGQVQSQVRVGYSLPPTGNNAP
CKATAALLGRSQAGRLFYDLRSRRGLTYGVYGSCIDNPLSRTLKFYGSSATESTGAFVRGILDHLSLLGSTAPSAAELQA
LDSYLIGQYKVNADTEGSAVGEWLAMLEQADFAGDASLPEYLPSPLVRASDMGNFPAQYLRNPPWVVIKGDATLLLPDLQ
QKLPDWEIKRLDKLP
>Mature_494_residues
SARRHLLLAVLGSGLLAGCQHKALEYEPIAPPVLADFSTPALLAMPLASNASDNRVTNENATATGTVPHQGIPFPVLHPA
VNPPRPATGMAMADDKGMLSFHHDERLEATHLVITTAGVITSGPLIARQMQAQLRLDALAGERCAETLSVIARPHSVVFS
SRCDGPMALLMRVRSLIERYGALDKDNSDRVIRESQLAKHIEAFSGRDIDRLWAQVVLGKSHPYLSLYNTPESKRPDLAD
VVKALAAQGRWHLIGARAPESLTSAVKPAFIASPYGIGESVSERRQNTGKVLYLLHAPGQVQSQVRVGYSLPPTGNNAPC
KATAALLGRSQAGRLFYDLRSRRGLTYGVYGSCIDNPLSRTLKFYGSSATESTGAFVRGILDHLSLLGSTAPSAAELQAL
DSYLIGQYKVNADTEGSAVGEWLAMLEQADFAGDASLPEYLPSPLVRASDMGNFPAQYLRNPPWVVIKGDATLLLPDLQQ
KLPDWEIKRLDKLP

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53430; Mature: 53298

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARRHLLLAVLGSGLLAGCQHKALEYEPIAPPVLADFSTPALLAMPLASNASDNRVTNE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCC
NATATGTVPHQGIPFPVLHPAVNPPRPATGMAMADDKGMLSFHHDERLEATHLVITTAGV
CCCEECCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCCEEECCCCCCCCEEEEEEECCH
ITSGPLIARQMQAQLRLDALAGERCAETLSVIARPHSVVFSSRCDGPMALLMRVRSLIER
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHH
YGALDKDNSDRVIRESQLAKHIEAFSGRDIDRLWAQVVLGKSHPYLSLYNTPESKRPDLA
HCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
DVVKALAAQGRWHLIGARAPESLTSAVKPAFIASPYGIGESVSERRQNTGKVLYLLHAPG
HHHHHHHCCCCEEEEECCCCHHHHHHHCCHHHCCCCCCCHHHHHHHCCCCCEEEEEECCC
QVQSQVRVGYSLPPTGNNAPCKATAALLGRSQAGRLFYDLRSRRGLTYGVYGSCIDNPLS
CHHHHHEECEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCHHHHCCHHH
RTLKFYGSSATESTGAFVRGILDHLSLLGSTAPSAAELQALDSYLIGQYKVNADTEGSAV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCCCCHHH
GEWLAMLEQADFAGDASLPEYLPSPLVRASDMGNFPAQYLRNPPWVVIKGDATLLLPDLQ
HHHHHHHHHHCCCCCCCCHHHCCCCHHHHCCCCCCCHHHHCCCCEEEEECCCEEECCHHH
QKLPDWEIKRLDKLP
HHCCCHHHHHHCCCC
>Mature Secondary Structure 
SARRHLLLAVLGSGLLAGCQHKALEYEPIAPPVLADFSTPALLAMPLASNASDNRVTNE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCC
NATATGTVPHQGIPFPVLHPAVNPPRPATGMAMADDKGMLSFHHDERLEATHLVITTAGV
CCCEECCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCCEEECCCCCCCCEEEEEEECCH
ITSGPLIARQMQAQLRLDALAGERCAETLSVIARPHSVVFSSRCDGPMALLMRVRSLIER
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHH
YGALDKDNSDRVIRESQLAKHIEAFSGRDIDRLWAQVVLGKSHPYLSLYNTPESKRPDLA
HCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
DVVKALAAQGRWHLIGARAPESLTSAVKPAFIASPYGIGESVSERRQNTGKVLYLLHAPG
HHHHHHHCCCCEEEEECCCCHHHHHHHCCHHHCCCCCCCHHHHHHHCCCCCEEEEEECCC
QVQSQVRVGYSLPPTGNNAPCKATAALLGRSQAGRLFYDLRSRRGLTYGVYGSCIDNPLS
CHHHHHEECEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCHHHHCCHHH
RTLKFYGSSATESTGAFVRGILDHLSLLGSTAPSAAELQALDSYLIGQYKVNADTEGSAV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCCCCHHH
GEWLAMLEQADFAGDASLPEYLPSPLVRASDMGNFPAQYLRNPPWVVIKGDATLLLPDLQ
HHHHHHHHHHCCCCCCCCHHHCCCCHHHHCCCCCCCHHHHCCCCEEEEECCCEEECCHHH
QKLPDWEIKRLDKLP
HHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA