| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is sspA [C]
Identifier: 119773820
GI number: 119773820
Start: 843635
End: 844309
Strand: Reverse
Name: sspA [C]
Synonym: Sama_0682
Alternate gene names: 119773820
Gene position: 844309-843635 (Counterclockwise)
Preceding gene: 119773821
Following gene: 119773818
Centisome position: 19.61
GC content: 58.96
Gene sequence:
>675_bases ATGCTGACGCTGTACATTGCCAATAAAAACTACTCCTCCTGGTCGCTGCGCCCCTGGCTGCTGTTGACCGAACTGGGTAT CCCCTTCGAAGAAAAGCTGCAGCCCTTTGGCGACAGCGACTTCAAACATTTCTCCCCCACAGCCAAGGTGCCCTGTTTGC TGGACGAAGGCGAGCCCGTGTGGGATTCACTGGCGATTATCGAGTATCTGGCCGAAAGCTACCCAGGCGTCTGGCCCGAG AACAAACAGGCACGGGCTTATGCGCGCTGCGCCGCTGCCGAGATGCACTCAGGATTCGGCACTATTCGCTCTATCTGCAC CATGAACTGTGGCATCAGGGTTAAGCTGCACGCGGTGGAGGAAGCCCTCGAGCGAGAGTGGGCCCGTATTGATGAGCTGT GGCAACAGGGACTTACCCGCTTCGGCGGCCCCTTCCTCGGCGGTCAGCACTTCAGTGCAGTGGATGCCTTTTTCGCCCCT ATTGCCTTTAGGGTACAGACTTATGCGCCCAAGCTGTCGAAGGCCTCTGACGCTTATGTCGCTGCCCTGCTCGACTTGCC GGGCATGCAGAGCTGGTATCAGTCGGCACTGGCCGAACCCTGGCGTGATGAGGCCCATGAGCAGGAGGCCCGCGAGGCGG GAGAAATCGTGTCTGATTTTCGTCTGGGCCAATGA
Upstream 100 bases:
>100_bases TATCAGGTAGAAGTGCTGGAGCTCAAGCGCAGTTACCGTGCTGGCTGAATCACCACTCATCAATCGCCAAATGTAGCCGT ATTTTGACAAGGAACTCCCC
Downstream 100 bases:
>100_bases CGAAATGGCGCCGGGCTGACGACAGGCCTATGCCGGCACTGAGTAGCCATGACCATCTCAGCATGAATGCAAAAGGCCCG GTTTAACCGGGCCTTTTACT
Product: putative glutathione S-transferase
Products: NA
Alternate protein names: Glutathione S-Transferase Domain-Containing Protein; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase Family Protein; Glutathione S-Transferase-Like Protein; Glutathione S-Transferase-Like; Glutathione-S-Transferase Protein; Glutathione S-Transferase Protein; Glutathione S-Transferase N-Terminal Domain Protein; Glutathione S-Transferase Domain; Glutathione S-Transferase N-Terminal Domain-Containing; Stringent Starvation Protein A; GSH-Dependent Dehydroascorbate Reductase; Maleylacetoacetate Isomerase; Glutathione S-Transferase N-Terminal; Glutathione-S-Tranferase Family Protein
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MLTLYIANKNYSSWSLRPWLLLTELGIPFEEKLQPFGDSDFKHFSPTAKVPCLLDEGEPVWDSLAIIEYLAESYPGVWPE NKQARAYARCAAAEMHSGFGTIRSICTMNCGIRVKLHAVEEALEREWARIDELWQQGLTRFGGPFLGGQHFSAVDAFFAP IAFRVQTYAPKLSKASDAYVAALLDLPGMQSWYQSALAEPWRDEAHEQEAREAGEIVSDFRLGQ
Sequences:
>Translated_224_residues MLTLYIANKNYSSWSLRPWLLLTELGIPFEEKLQPFGDSDFKHFSPTAKVPCLLDEGEPVWDSLAIIEYLAESYPGVWPE NKQARAYARCAAAEMHSGFGTIRSICTMNCGIRVKLHAVEEALEREWARIDELWQQGLTRFGGPFLGGQHFSAVDAFFAP IAFRVQTYAPKLSKASDAYVAALLDLPGMQSWYQSALAEPWRDEAHEQEAREAGEIVSDFRLGQ >Mature_224_residues MLTLYIANKNYSSWSLRPWLLLTELGIPFEEKLQPFGDSDFKHFSPTAKVPCLLDEGEPVWDSLAIIEYLAESYPGVWPE NKQARAYARCAAAEMHSGFGTIRSICTMNCGIRVKLHAVEEALEREWARIDELWQQGLTRFGGPFLGGQHFSAVDAFFAP IAFRVQTYAPKLSKASDAYVAALLDLPGMQSWYQSALAEPWRDEAHEQEAREAGEIVSDFRLGQ
Specific function: Forms An Equimolar Complex With The RNA Polymerase Holoenzyme (Rnap) But Not With The Core Enzyme. It Is Synthesized Predominantly When Cells Are Exposed To Amino Acid Starvation, At Which Time It Accounts For Over 50% Of The Total Protein Synthesized. It
COG id: COG0625
COG function: function code O; Glutathione S-transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1982 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25251; Mature: 25251
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLYIANKNYSSWSLRPWLLLTELGIPFEEKLQPFGDSDFKHFSPTAKVPCLLDEGEPV CEEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCH WDSLAIIEYLAESYPGVWPENKQARAYARCAAAEMHSGFGTIRSICTMNCGIRVKLHAVE HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH EALEREWARIDELWQQGLTRFGGPFLGGQHFSAVDAFFAPIAFRVQTYAPKLSKASDAYV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH AALLDLPGMQSWYQSALAEPWRDEAHEQEAREAGEIVSDFRLGQ HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLTLYIANKNYSSWSLRPWLLLTELGIPFEEKLQPFGDSDFKHFSPTAKVPCLLDEGEPV CEEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCH WDSLAIIEYLAESYPGVWPENKQARAYARCAAAEMHSGFGTIRSICTMNCGIRVKLHAVE HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH EALEREWARIDELWQQGLTRFGGPFLGGQHFSAVDAFFAPIAFRVQTYAPKLSKASDAYV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH AALLDLPGMQSWYQSALAEPWRDEAHEQEAREAGEIVSDFRLGQ HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA