Click here to switch to the map view.

The map label for this gene is 119773818

Identifier: 119773818

GI number: 119773818

Start: 841258

End: 842772

Strand: Reverse

Name: 119773818

Synonym: Sama_0680

Alternate gene names: NA

Gene position: 842772-841258 (Counterclockwise)

Preceding gene: 119773820

Following gene: 119773809

Centisome position: 19.57

GC content: 54.92

Gene sequence:

>1515_bases
ATGACCAGTGAAAAAAGCCTGATGCGCCAATCCCATTTTCTGGGCACCAAAATCAGAAACTTACGGAAACGCAATCACTT
AACCATGGAAGATCTGTCTTCACGCTGTGTACGTGTGGATCCCGGTTCGGCGCCCTCCGTATCTTACCTGTCGATGATTG
AGCGGGGAAAACGGGTGCCCAGTGCCGCCATGCTGGAGGTGATTGCCAAGGTATTTGAGAAATCACCGGACTGGTTTTTG
GACGATGCGCCCGAAGAAGACGCCATCACCCCGGACAAGGGACGCCGGGGTGGCATCAGCGGCATGGCGCTGGAGCCGGG
CTTTTTGTTTTCCAAAGATATTTTGCAGATTGCCATTCCCGAAATGCTGTCGCAGACCGGGATCAGCGGCCGCCAGTTTG
CCCATTTGCTGATCCGCGCCCATCAGGAGCATCATCAAAATCATTTCCCCGATCTGGAACGTGCCGCAGAAGAAGTTGGT
GATAAGCGGCTGAATCTCAGTGGCGACGATCTGACGGCCATCTGCAAACAGATGGGCATGAAAATTCGCTTCTTCAAAGA
GCCACCTCAGGATCAGGTTGACGCTAACGGCGTGTCCACCCATCAACTGGTCACCTCATTTTTCGAGCCACCCTCCACCA
TCTTTATCAATGAAGCCCTGAAGAAAAATCCCGAGCGGCTCAAATACGATTTGGCGGTACACATAGGCCACTGCGTGCTG
CACAACAAGGACGGCCTGAAGAATGTACTGGCAGTGGGACGTGGTATAGGCACAGGTGAGCAGGATGCCGATATATCCTC
CACCGTGAATGCCCAGGATATCTTAAGTGCCTGGCGCGACTTTGAATCCAGCTTTTTTGCCGGCGCCCTGCTTTGTCCCA
AGGTGCCTTTCCGACAGCTATTGGAGCGGGGGGGCTATGAAATTGATACCCATAAAAAAATCGGCGTGTCTGCCTCGGTG
GCCATGCGCCGTATGACTGTGGTCTCTCCCTATCCCCACTGGCATTACTTCGATGCTTATGCGCCGGGCAAGCTCAAGGC
GGTATATCGGGGTAACGGCATTCCCCTGCCCTGGGGCAACATGCGTCAGGTGCCGGACCCCTGCCAGCACTGGGCAGTAT
TTCGCATGATAAGCGAGCCATCCGATGGCAGCTCGGCGCAAATTTCCATTCTGGATGTGGGCGGCAGCCCACGGATTTAC
TGCTGTGAATCCACCAAGGTGGTGGATTTGGCCGGAAACCACCATGTGCTCTGCGCAGGGATAGATTTGAACCCCGCCAT
CGATGCCCAGGGCACCGATGCCTTAAGTCTCGCCGAGGCACTCAAAAGCCACTGTGTAGCATCAGGTGGTCAGGGGGAAA
TTCCCACTGCCATAAAACGCCAGCTGATGAGCATTGCCCGGATTCTCAATATCAATTGGGTGGAGCGCGGTATCGACAAG
GGTGCCAGATTGATTTGCTCCCGGGGCAATGTGTGCCCACGCAAACCCAGCTGCTATGGGGGTTGCAAGGGGTAA

Upstream 100 bases:

>100_bases
GGGGTGCGTCGTGCAGTCGGTGAATTTCGCTTGATTTTTAGTCTATGTTATTTTTTACTACAATTTCACAATAAAAATTT
TACAGTGTGAATTTTACAAA

Downstream 100 bases:

>100_bases
GTGTTTTGCCTTCGCAGACGGTGAATCTGCTTTGCCATAAGCTGGCACACCAATAAAAAAGGCCGCCTCCCGGGAGATGT
GGGAAGCGGCCTTGCCTTCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator MerR Family; Transciptional Regulator; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator XRE Family Protein

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MTSEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVPSAAMLEVIAKVFEKSPDWFL
DDAPEEDAITPDKGRRGGISGMALEPGFLFSKDILQIAIPEMLSQTGISGRQFAHLLIRAHQEHHQNHFPDLERAAEEVG
DKRLNLSGDDLTAICKQMGMKIRFFKEPPQDQVDANGVSTHQLVTSFFEPPSTIFINEALKKNPERLKYDLAVHIGHCVL
HNKDGLKNVLAVGRGIGTGEQDADISSTVNAQDILSAWRDFESSFFAGALLCPKVPFRQLLERGGYEIDTHKKIGVSASV
AMRRMTVVSPYPHWHYFDAYAPGKLKAVYRGNGIPLPWGNMRQVPDPCQHWAVFRMISEPSDGSSAQISILDVGGSPRIY
CCESTKVVDLAGNHHVLCAGIDLNPAIDAQGTDALSLAEALKSHCVASGGQGEIPTAIKRQLMSIARILNINWVERGIDK
GARLICSRGNVCPRKPSCYGGCKG

Sequences:

>Translated_504_residues
MTSEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVPSAAMLEVIAKVFEKSPDWFL
DDAPEEDAITPDKGRRGGISGMALEPGFLFSKDILQIAIPEMLSQTGISGRQFAHLLIRAHQEHHQNHFPDLERAAEEVG
DKRLNLSGDDLTAICKQMGMKIRFFKEPPQDQVDANGVSTHQLVTSFFEPPSTIFINEALKKNPERLKYDLAVHIGHCVL
HNKDGLKNVLAVGRGIGTGEQDADISSTVNAQDILSAWRDFESSFFAGALLCPKVPFRQLLERGGYEIDTHKKIGVSASV
AMRRMTVVSPYPHWHYFDAYAPGKLKAVYRGNGIPLPWGNMRQVPDPCQHWAVFRMISEPSDGSSAQISILDVGGSPRIY
CCESTKVVDLAGNHHVLCAGIDLNPAIDAQGTDALSLAEALKSHCVASGGQGEIPTAIKRQLMSIARILNINWVERGIDK
GARLICSRGNVCPRKPSCYGGCKG
>Mature_503_residues
TSEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVPSAAMLEVIAKVFEKSPDWFLD
DAPEEDAITPDKGRRGGISGMALEPGFLFSKDILQIAIPEMLSQTGISGRQFAHLLIRAHQEHHQNHFPDLERAAEEVGD
KRLNLSGDDLTAICKQMGMKIRFFKEPPQDQVDANGVSTHQLVTSFFEPPSTIFINEALKKNPERLKYDLAVHIGHCVLH
NKDGLKNVLAVGRGIGTGEQDADISSTVNAQDILSAWRDFESSFFAGALLCPKVPFRQLLERGGYEIDTHKKIGVSASVA
MRRMTVVSPYPHWHYFDAYAPGKLKAVYRGNGIPLPWGNMRQVPDPCQHWAVFRMISEPSDGSSAQISILDVGGSPRIYC
CESTKVVDLAGNHHVLCAGIDLNPAIDAQGTDALSLAEALKSHCVASGGQGEIPTAIKRQLMSIARILNINWVERGIDKG
ARLICSRGNVCPRKPSCYGGCKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55458; Mature: 55327

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVP
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCC
SAAMLEVIAKVFEKSPDWFLDDAPEEDAITPDKGRRGGISGMALEPGFLFSKDILQIAIP
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
EMLSQTGISGRQFAHLLIRAHQEHHQNHFPDLERAAEEVGDKRLNLSGDDLTAICKQMGM
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHCC
KIRFFKEPPQDQVDANGVSTHQLVTSFFEPPSTIFINEALKKNPERLKYDLAVHIGHCVL
EEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCHHHHEEHHEEEEEEEEE
HNKDGLKNVLAVGRGIGTGEQDADISSTVNAQDILSAWRDFESSFFAGALLCPKVPFRQL
ECCCHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LERGGYEIDTHKKIGVSASVAMRRMTVVSPYPHWHYFDAYAPGKLKAVYRGNGIPLPWGN
HHCCCCEEECCCCCCCHHHHHHHHHHEECCCCCCEEECCCCCCCEEEEEECCCCCCCCCC
MRQVPDPCQHWAVFRMISEPSDGSSAQISILDVGGSPRIYCCESTKVVDLAGNHHVLCAG
CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEECCCCEEEEEE
IDLNPAIDAQGTDALSLAEALKSHCVASGGQGEIPTAIKRQLMSIARILNINWVERGIDK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
GARLICSRGNVCPRKPSCYGGCKG
HHHEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVP
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCC
SAAMLEVIAKVFEKSPDWFLDDAPEEDAITPDKGRRGGISGMALEPGFLFSKDILQIAIP
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
EMLSQTGISGRQFAHLLIRAHQEHHQNHFPDLERAAEEVGDKRLNLSGDDLTAICKQMGM
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHCC
KIRFFKEPPQDQVDANGVSTHQLVTSFFEPPSTIFINEALKKNPERLKYDLAVHIGHCVL
EEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCHHHHEEHHEEEEEEEEE
HNKDGLKNVLAVGRGIGTGEQDADISSTVNAQDILSAWRDFESSFFAGALLCPKVPFRQL
ECCCHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LERGGYEIDTHKKIGVSASVAMRRMTVVSPYPHWHYFDAYAPGKLKAVYRGNGIPLPWGN
HHCCCCEEECCCCCCCHHHHHHHHHHEECCCCCCEEECCCCCCCEEEEEECCCCCCCCCC
MRQVPDPCQHWAVFRMISEPSDGSSAQISILDVGGSPRIYCCESTKVVDLAGNHHVLCAG
CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEECCCCEEEEEE
IDLNPAIDAQGTDALSLAEALKSHCVASGGQGEIPTAIKRQLMSIARILNINWVERGIDK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
GARLICSRGNVCPRKPSCYGGCKG
HHHEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA