| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773803
Identifier: 119773803
GI number: 119773803
Start: 820102
End: 820605
Strand: Reverse
Name: 119773803
Synonym: Sama_0665
Alternate gene names: NA
Gene position: 820605-820102 (Counterclockwise)
Preceding gene: 119773809
Following gene: 119773799
Centisome position: 19.06
GC content: 50.4
Gene sequence:
>504_bases ATGGACGTGTTTTTGCTGTTGCTGGCTCTGGCTTTGTCAGTAGGCTGGTTTGTTTACAGTAAGTATCAATCGGATCACTG GCATCAACGAAACAGGGAATGCAGACACAAAAAGCGCGCTGTTGTGCCCCACGAGTTGGAGATACCCAAGGATTATGGTG TCTATGAATCACTCGAAGAGGTTGAGCATCAGGCCAGAATCAATGGCGCGCGACCACAGGGGCTGCATCCATTTCATTGT GTCAGTGTGGTTGCAGGCCTGAATGACTGTAACGCCAGACAGGCCATTGATGGGCACAGATTTCTATCCGGTGAAGCACC TGCTATCCCGCTGAAAGGTTGTAACGCAGAAACTTGCCATTGCCATTATCAGCACTTTGAAGACCGCCGGGTACCACACT CAGATCGTCGGGCCAGGTATGGGCTGACCGAAGAGCTGTATGGACATTTCGGTGAAAAAAACAAACGTCAACTCCCCAAA GGGCGACGCATTACCGATGTTTAG
Upstream 100 bases:
>100_bases TTACTCAATGCCTTACAATATTGCACTGCAAGCAAACCGCGAATTATCTCAAACTAAACTAAACTGAAACTTAATTGTTT ACCGACAGAGGGCGAGCATC
Downstream 100 bases:
>100_bases CAGACAATATCCGGACGGGTTTCACGGAATATTGGCAGTTCGCGTACCTCTTCAAACCACAGTGTCAGAGCGGGAGCAAG GTTACGCCATTCCAGTGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MDVFLLLLALALSVGWFVYSKYQSDHWHQRNRECRHKKRAVVPHELEIPKDYGVYESLEEVEHQARINGARPQGLHPFHC VSVVAGLNDCNARQAIDGHRFLSGEAPAIPLKGCNAETCHCHYQHFEDRRVPHSDRRARYGLTEELYGHFGEKNKRQLPK GRRITDV
Sequences:
>Translated_167_residues MDVFLLLLALALSVGWFVYSKYQSDHWHQRNRECRHKKRAVVPHELEIPKDYGVYESLEEVEHQARINGARPQGLHPFHC VSVVAGLNDCNARQAIDGHRFLSGEAPAIPLKGCNAETCHCHYQHFEDRRVPHSDRRARYGLTEELYGHFGEKNKRQLPK GRRITDV >Mature_167_residues MDVFLLLLALALSVGWFVYSKYQSDHWHQRNRECRHKKRAVVPHELEIPKDYGVYESLEEVEHQARINGARPQGLHPFHC VSVVAGLNDCNARQAIDGHRFLSGEAPAIPLKGCNAETCHCHYQHFEDRRVPHSDRRARYGLTEELYGHFGEKNKRQLPK GRRITDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19334; Mature: 19334
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVFLLLLALALSVGWFVYSKYQSDHWHQRNRECRHKKRAVVPHELEIPKDYGVYESLEE CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH VEHQARINGARPQGLHPFHCVSVVAGLNDCNARQAIDGHRFLSGEAPAIPLKGCNAETCH HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCCHHH CHYQHFEDRRVPHSDRRARYGLTEELYGHFGEKNKRQLPKGRRITDV HHHHHHHHCCCCCCCCHHHCCCHHHHHHHCCCCCHHCCCCCCCCCCC >Mature Secondary Structure MDVFLLLLALALSVGWFVYSKYQSDHWHQRNRECRHKKRAVVPHELEIPKDYGVYESLEE CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH VEHQARINGARPQGLHPFHCVSVVAGLNDCNARQAIDGHRFLSGEAPAIPLKGCNAETCH HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCCHHH CHYQHFEDRRVPHSDRRARYGLTEELYGHFGEKNKRQLPKGRRITDV HHHHHHHHCCCCCCCCHHHCCCHHHHHHHCCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA