Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
---|---|
Accession | NC_008700 |
Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773702
Identifier: 119773702
GI number: 119773702
Start: 701524
End: 703878
Strand: Reverse
Name: 119773702
Synonym: Sama_0564
Alternate gene names: NA
Gene position: 703878-701524 (Counterclockwise)
Preceding gene: 119773704
Following gene: 119773701
Centisome position: 16.35
GC content: 56.43
Gene sequence:
>2355_bases ATGGGAATGTTAACAAAATGGTCGCTGCTGACCTGTGTGCTGCTGGGCAGCCTTCAGCTGCATGCCGAAGATCTCACTCA ATGGGTTGACCCTTTCATCGGCACAGGCGGCGATGGCCATACCTTTCCCGGTGCCGTTGTGCCCTTCGGCATGGTGCAGT TAAGCCCCGATACCGACAATCCCATGCGTGGCGTATCGCCTCAAAGCGAAATCTACAAGCGCTGCGCCGGTTACCACTAT GACGACAGCACCATAGTTGGCTTCTCCCACACGCATTTCAGCGGCACAGGCCACTCGGATCTGGGCGATCTCTTGATTAT GCCGATGACAGGCACTCCCCACACAGAGCCAGGCACGGCGACAGATCCAGACAGTGGCTATCGCTCCCGTTTCAGCCACG ACGATGAAGAAGCCTCACCCGGCTACTACCGGGTTAAACTCACCGATTATCAAATCGATGCCGAACTCACCACTACCGCT CGCACCGGCATGCACAGGTACAGCTTCCCCGAAACCCATCAGGGCCATGTACTGATTGATTTGACCCACGGCATCTACAA CTTTGCCAATAAGGTGATTTGGAGCGATGTGCGGGTGGTGGACGACAGCACCCTTATCACCTCGCGTCGCTCCAACGGCT GGGCGCACGAGCGGCCCATGTACTTCGCCATCCGTTTCTCCCGCCCTTTCGACGACATTGAACTTATCAACGAAGACAAC GCCCGCTACCGCTGCATGGGCTGTCTCGACAAGAAAGATGGCAAGCACTCCACCATAGTCAACAGCCGCATCCCTTTTAC TGCGGGTAAGGCGGTGAAGGTGCTGGCTCGATTCGATAACCCCCATCAGGCGCCGCTTTTGGTAAAAGTGGGCATATCAG CAGTGGATAAGAGTAATGCGCTGGATAACTTAACCAGCGAGCTGCCCCACTGGGATTTTGACAAGGTACGCAGCGACGCC AACGCCGCCTGGCAGACCGAGCTTGAACGGATGGAAGCCAAGGGCGACCAGTCGCAAAAGCGCCAGTTCTATACCGCGTT CTACCACGCGCTGCAGGCACCGAGTCTGTATCAGGACGTCAATGGCGAGTACCTCGGTGTAGATGGTGAAATCCATAAGG CCGACTTTCCCCACTACAGCCTTTTTTCACTGTGGGATACCTACCGCGCCCTGCATCCGCTGCTGACTCTGGTGTCCCCC GAGCGGGTGCCGGACATGATTAACTCCATGCTGGCCCATTATGACCAGAGCTATGACCGTATCCTGCCGATATGGTCTTT TCAGGGCCACGAGACCTGGACCATGATTGGCTACCATGCTGTCTCTGTTATCAGCGACGCCTGGCAAAAGGGTATTCGCG GCTTTGATGGAGAGCGGGCGCTGGATGCCATGACCGCCACCGCCAACCACCCCAACTACGATGCCATCCCTGAGTATCTT AAATACGGCTATGTGCCCATGGATGTGCTGCCCGAGTCAGTGTCCATCACCCTGGAATACGCCTACGATGACTTTGCCAT CGCCCGCATGGCACAGAGCATGGGCGAAACAGACATCGCCAAAGCCTTCGACAAGCGCGCCCAGAGCTGGCGTAACGTGT TTGATCCCGAAACCAAATTTGCCCGCGGCCGCGACAGCAAAGGCCACTGGGACAAAGACTTCGACGTGGAAGAAGCCAAG TACATGGGCCCCTTTACCGAGGGCAACAGCTTCCAGTACAGCTTCTATGTACCCCACGATGTGGCGGGGCTTATCGATAT CAAGGGGGGCGACGGCGCCTTTATCGAGCGTTTGGATGAGCTTTTTACCCGTCCGCTCCATGCCGACAAAATCAAGGAAC ATGAGGATATCGCCGGTTTGATTGGCCAGTACGCCCACGGCAACGAGCCAAGCCACCACATTGCTTATCTATACAACCAC GCCGGCGCCCCCTGGATGACCCAGGCACGTATCCGCCAAATCATGGATACCCTGTCAAATGACACGCCATCGGGCCTCGC CGGTAACGACGATGTGGGTCAGATGTCGGCCTGGTATCTGTTCTCAGCCATGGGCTTTTACCCGGTGACGCCGGGGGATA TGACCTACGTGATTGGCGCGCCGCAGCTGCCTGAGGTGACTCTCAATCTCAGTAACGGCAAGCACTTTAAGGTTATCGCC AAGGGGCTGTCCAAGGACAAGCTGTACATTGCCAGCGTCAGTCTGAATGGCAAGCCGCTAAATCGAAGCTATCTGCACCA CGATGACATCATGGCCGGTGGCGAGCTGGTGTTTGAGATGGCAGCTACGCCGAACAAAGCCTGGGGCATGGCAATTGATA CCCGCCCCAAGGCCATGAGCCCTTACAAAAACTAA
Upstream 100 bases:
>100_bases ACCAGCCACTAATTATATTAACACAAATTGGAACGTTCCAATTGCATTTTATCCATACTAACCCATTGCCTAAAAAAGAA AACAGCAAGGAGCCCTGCGG
Downstream 100 bases:
>100_bases AAACGTCCATAGTCAAAAACGGAAAAGGACAAACAAGGACAGACAATGCACATACCTCGTACCCTCATCGGCATCGCCGT TTCTGCCGCGCTTGGCGCCA
Product: alpha-1,2-mannosidase family protein
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Sugar Hydrolase; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Exported Alpha-1 2-Mannosidase; Antigen; Alpha-1 2-Mannosidase Protein; Lipoprotein
Number of amino acids: Translated: 784; Mature: 783
Protein sequence:
>784_residues MGMLTKWSLLTCVLLGSLQLHAEDLTQWVDPFIGTGGDGHTFPGAVVPFGMVQLSPDTDNPMRGVSPQSEIYKRCAGYHY DDSTIVGFSHTHFSGTGHSDLGDLLIMPMTGTPHTEPGTATDPDSGYRSRFSHDDEEASPGYYRVKLTDYQIDAELTTTA RTGMHRYSFPETHQGHVLIDLTHGIYNFANKVIWSDVRVVDDSTLITSRRSNGWAHERPMYFAIRFSRPFDDIELINEDN ARYRCMGCLDKKDGKHSTIVNSRIPFTAGKAVKVLARFDNPHQAPLLVKVGISAVDKSNALDNLTSELPHWDFDKVRSDA NAAWQTELERMEAKGDQSQKRQFYTAFYHALQAPSLYQDVNGEYLGVDGEIHKADFPHYSLFSLWDTYRALHPLLTLVSP ERVPDMINSMLAHYDQSYDRILPIWSFQGHETWTMIGYHAVSVISDAWQKGIRGFDGERALDAMTATANHPNYDAIPEYL KYGYVPMDVLPESVSITLEYAYDDFAIARMAQSMGETDIAKAFDKRAQSWRNVFDPETKFARGRDSKGHWDKDFDVEEAK YMGPFTEGNSFQYSFYVPHDVAGLIDIKGGDGAFIERLDELFTRPLHADKIKEHEDIAGLIGQYAHGNEPSHHIAYLYNH AGAPWMTQARIRQIMDTLSNDTPSGLAGNDDVGQMSAWYLFSAMGFYPVTPGDMTYVIGAPQLPEVTLNLSNGKHFKVIA KGLSKDKLYIASVSLNGKPLNRSYLHHDDIMAGGELVFEMAATPNKAWGMAIDTRPKAMSPYKN
Sequences:
>Translated_784_residues MGMLTKWSLLTCVLLGSLQLHAEDLTQWVDPFIGTGGDGHTFPGAVVPFGMVQLSPDTDNPMRGVSPQSEIYKRCAGYHY DDSTIVGFSHTHFSGTGHSDLGDLLIMPMTGTPHTEPGTATDPDSGYRSRFSHDDEEASPGYYRVKLTDYQIDAELTTTA RTGMHRYSFPETHQGHVLIDLTHGIYNFANKVIWSDVRVVDDSTLITSRRSNGWAHERPMYFAIRFSRPFDDIELINEDN ARYRCMGCLDKKDGKHSTIVNSRIPFTAGKAVKVLARFDNPHQAPLLVKVGISAVDKSNALDNLTSELPHWDFDKVRSDA NAAWQTELERMEAKGDQSQKRQFYTAFYHALQAPSLYQDVNGEYLGVDGEIHKADFPHYSLFSLWDTYRALHPLLTLVSP ERVPDMINSMLAHYDQSYDRILPIWSFQGHETWTMIGYHAVSVISDAWQKGIRGFDGERALDAMTATANHPNYDAIPEYL KYGYVPMDVLPESVSITLEYAYDDFAIARMAQSMGETDIAKAFDKRAQSWRNVFDPETKFARGRDSKGHWDKDFDVEEAK YMGPFTEGNSFQYSFYVPHDVAGLIDIKGGDGAFIERLDELFTRPLHADKIKEHEDIAGLIGQYAHGNEPSHHIAYLYNH AGAPWMTQARIRQIMDTLSNDTPSGLAGNDDVGQMSAWYLFSAMGFYPVTPGDMTYVIGAPQLPEVTLNLSNGKHFKVIA KGLSKDKLYIASVSLNGKPLNRSYLHHDDIMAGGELVFEMAATPNKAWGMAIDTRPKAMSPYKN >Mature_783_residues GMLTKWSLLTCVLLGSLQLHAEDLTQWVDPFIGTGGDGHTFPGAVVPFGMVQLSPDTDNPMRGVSPQSEIYKRCAGYHYD DSTIVGFSHTHFSGTGHSDLGDLLIMPMTGTPHTEPGTATDPDSGYRSRFSHDDEEASPGYYRVKLTDYQIDAELTTTAR TGMHRYSFPETHQGHVLIDLTHGIYNFANKVIWSDVRVVDDSTLITSRRSNGWAHERPMYFAIRFSRPFDDIELINEDNA RYRCMGCLDKKDGKHSTIVNSRIPFTAGKAVKVLARFDNPHQAPLLVKVGISAVDKSNALDNLTSELPHWDFDKVRSDAN AAWQTELERMEAKGDQSQKRQFYTAFYHALQAPSLYQDVNGEYLGVDGEIHKADFPHYSLFSLWDTYRALHPLLTLVSPE RVPDMINSMLAHYDQSYDRILPIWSFQGHETWTMIGYHAVSVISDAWQKGIRGFDGERALDAMTATANHPNYDAIPEYLK YGYVPMDVLPESVSITLEYAYDDFAIARMAQSMGETDIAKAFDKRAQSWRNVFDPETKFARGRDSKGHWDKDFDVEEAKY MGPFTEGNSFQYSFYVPHDVAGLIDIKGGDGAFIERLDELFTRPLHADKIKEHEDIAGLIGQYAHGNEPSHHIAYLYNHA GAPWMTQARIRQIMDTLSNDTPSGLAGNDDVGQMSAWYLFSAMGFYPVTPGDMTYVIGAPQLPEVTLNLSNGKHFKVIAK GLSKDKLYIASVSLNGKPLNRSYLHHDDIMAGGELVFEMAATPNKAWGMAIDTRPKAMSPYKN
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88007; Mature: 87875
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMLTKWSLLTCVLLGSLQLHAEDLTQWVDPFIGTGGDGHTFPGAVVPFGMVQLSPDTDN CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEECCCCCC PMRGVSPQSEIYKRCAGYHYDDSTIVGFSHTHFSGTGHSDLGDLLIMPMTGTPHTEPGTA CCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC TDPDSGYRSRFSHDDEEASPGYYRVKLTDYQIDAELTTTARTGMHRYSFPETHQGHVLID CCCCCCHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEHHHHHCCCCCCCCCCCCCCEEEE LTHGIYNFANKVIWSDVRVVDDSTLITSRRSNGWAHERPMYFAIRFSRPFDDIELINEDN ECHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHEECCCC ARYRCMGCLDKKDGKHSTIVNSRIPFTAGKAVKVLARFDNPHQAPLLVKVGISAVDKSNA CCEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHEECCCCCCCCCEEEEECCHHHCCCHH LDNLTSELPHWDFDKVRSDANAAWQTELERMEAKGDQSQKRQFYTAFYHALQAPSLYQDV HHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHC NGEYLGVDGEIHKADFPHYSLFSLWDTYRALHPLLTLVSPERVPDMINSMLAHYDQSYDR CCCEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC ILPIWSFQGHETWTMIGYHAVSVISDAWQKGIRGFDGERALDAMTATANHPNYDAIPEYL EEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHH KYGYVPMDVLPESVSITLEYAYDDFAIARMAQSMGETDIAKAFDKRAQSWRNVFDPETKF HCCCCCHHHCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHH ARGRDSKGHWDKDFDVEEAKYMGPFTEGNSFQYSFYVPHDVAGLIDIKGGDGAFIERLDE HCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHH LFTRPLHADKIKEHEDIAGLIGQYAHGNEPSHHIAYLYNHAGAPWMTQARIRQIMDTLSN HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC DTPSGLAGNDDVGQMSAWYLFSAMGFYPVTPGDMTYVIGAPQLPEVTLNLSNGKHFKVIA CCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCEEEEECCCCCEEEEEE KGLSKDKLYIASVSLNGKPLNRSYLHHDDIMAGGELVFEMAATPNKAWGMAIDTRPKAMS CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC PYKN CCCC >Mature Secondary Structure GMLTKWSLLTCVLLGSLQLHAEDLTQWVDPFIGTGGDGHTFPGAVVPFGMVQLSPDTDN CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEECCCCCC PMRGVSPQSEIYKRCAGYHYDDSTIVGFSHTHFSGTGHSDLGDLLIMPMTGTPHTEPGTA CCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC TDPDSGYRSRFSHDDEEASPGYYRVKLTDYQIDAELTTTARTGMHRYSFPETHQGHVLID CCCCCCHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEHHHHHCCCCCCCCCCCCCCEEEE LTHGIYNFANKVIWSDVRVVDDSTLITSRRSNGWAHERPMYFAIRFSRPFDDIELINEDN ECHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHEECCCC ARYRCMGCLDKKDGKHSTIVNSRIPFTAGKAVKVLARFDNPHQAPLLVKVGISAVDKSNA CCEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHEECCCCCCCCCEEEEECCHHHCCCHH LDNLTSELPHWDFDKVRSDANAAWQTELERMEAKGDQSQKRQFYTAFYHALQAPSLYQDV HHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHC NGEYLGVDGEIHKADFPHYSLFSLWDTYRALHPLLTLVSPERVPDMINSMLAHYDQSYDR CCCEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC ILPIWSFQGHETWTMIGYHAVSVISDAWQKGIRGFDGERALDAMTATANHPNYDAIPEYL EEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHH KYGYVPMDVLPESVSITLEYAYDDFAIARMAQSMGETDIAKAFDKRAQSWRNVFDPETKF HCCCCCHHHCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHH ARGRDSKGHWDKDFDVEEAKYMGPFTEGNSFQYSFYVPHDVAGLIDIKGGDGAFIERLDE HCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHH LFTRPLHADKIKEHEDIAGLIGQYAHGNEPSHHIAYLYNHAGAPWMTQARIRQIMDTLSN HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC DTPSGLAGNDDVGQMSAWYLFSAMGFYPVTPGDMTYVIGAPQLPEVTLNLSNGKHFKVIA CCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCEEEEECCCCCEEEEEE KGLSKDKLYIASVSLNGKPLNRSYLHHDDIMAGGELVFEMAATPNKAWGMAIDTRPKAMS CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC PYKN CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA