Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773701
Identifier: 119773701
GI number: 119773701
Start: 698929
End: 701478
Strand: Reverse
Name: 119773701
Synonym: Sama_0563
Alternate gene names: NA
Gene position: 701478-698929 (Counterclockwise)
Preceding gene: 119773702
Following gene: 119773700
Centisome position: 16.29
GC content: 57.84
Gene sequence:
>2550_bases ATGCACATACCTCGTACCCTCATCGGCATCGCCGTTTCTGCCGCGCTTGGCGCCATCTCGCTCAGTGGCTGCAGCAGCGA AGCCGATACAAATCGAAACCAGCAGGCCAACCCGGCGACTACTGCCGTTAACGCTACTACCAATGCTAACGCAACGGCCC CCAACTGGATTAAACAGCCGGTGGACTTTGTTGACCCTTTGATTGGCAGCCAGGGGGTATTCAACCATCGCCAGGCCGCC AACGTGGCTGTGGGCGCCTCACTGCCCTTTGGCATGTTCAACTTTGGTCCCGAGCACGCCTATACCGAGGCGCTGCTGAA TGAAAGTGAAGGGCTGAAAAAGCGGGTGCTGGAAGAAAAGGTACGCATTCCTGTCTCCCCCGGCGGTTACAACTACGATG CCACCCGCGTTAAGGGTTTCAGCTTTACCCGCCTGTCAGGCACCGGCTGCCTTGGCGCCTCCGGCGAAGTGCCTGTGCTG CCTTTTTTAGAGCCTATCAAGCATTCACCCGACACAGACCTGATGGACACTTACTACAGCGTGGGTTACAGCCACGCCAA TGAAAGTGTGCGCCCGGGCAGCTACCGCATCACCCTGGATAACGGCGTTGGTGTGAATTTAAGCGCCACGGAGCGCAGCG GCATCGCTGAGTTTGCCTTCCCCAAAGACGCCGCCGCCAAACTGCTGTTTCGCACCGCCTATAACCAGCTTGGCAGCGAA AAGGCAAGCACCCGCTTTCACCCCGAGACCGGTGAAATCACAGGCTCAGTTACCAGCGGTAACTTCTGCGGCTATTTGGG TGAAGCCAACCGCTACAGCTATTACACCCTGCACTTTGTCGCCAAACTCGATGTACCTGTGACCTCCAGCGGCGGCTGGC AGGATGACAAGATGCGGCCCGGCGCCAGCTACAGCGAGGGCGGTACCGGCTATGGCCCCAAGGGCGTCCCCGAATTGGGC AAGGGTTCAGGCCTGTGGCTTGAGCTGGATACCTCAGTGCAGCAAAAGGTCACCATGCGGGTGGGTATCTCTTACGTAAG TGAAGCCAATGCCCGCCAAAATCTGATTGCCGAGCAGGCCCATAAGGACTTTGCCGCGGTGGAAGCGGCGGCCAATCAAC GCTGGAACGATACCCTCGCCAAGGTCGCCGTTGCTGCCGACCCCGTGGATGCCAAAAACCGGCTGACCACCTTTTACACC GCGCTTTACCATGCCCTGCACCACCCTAATCTGTTCAGTGACGTCAATGGCGAGTACACCGGCTTCGATGGCACGGTACA CCGCCTGAGTCAGGGCCAGCAGGCACAATACGCCAACTATTCGCTGTGGGATGTGTATCGCTCGCAGCTGCAACTTATCA GCCTGATGGAGCCCAAAGTTGGCTCCGACATGGCCCAGTCGATGCTCAATCAGGCCAATCAATACGGCGGTGTGTGGGAC AGATGGACCCACAATTCAGGACCCACCTCGGTGATGTCCGGCGATCCTTCCACCATCGCCATTGCCAATTTTGTCGCCTT TGGCGCCGATGACTTTGCCGTCAAAGAGGCCTATCAGTCACTGTACAAGGCTGCTACCGAGCCGACCCAGTTTGACCTTG GCAACACCGGCTGCCCGGTGTTCTGCCGAGGTCAGCGCCCGTCGCTGGATCAGTGGCTGTCGCTCAATTACATTTCCGAC CAATCCAATAGCTGGGAAGGCGCCAGCGAAACCCTGGAGCAGGTGAGCGCCGATTTCGCCCTCTCGCAGCTGGCGGCACG TCTTGGCAAGCAAAGCCAGAGCGACGAGATGCTCGCCCGCGCCGGCTACTGGAAAAACCTCTACAACCCCAAAGCCACCG ACAAGCTGGGCTACATTCAGGGCCGTAACAAAGATGGCAGCTGGAAGGCAGACTTTGATCCCGCAAGCCCGCATCTCTTT GTCGAAGGCAGCCCGGCTCAGTATCTGTGGATGCTGCCCTTTGATGGTGCCGGCATGTCAGCACTGCTCGGCGGTGATGC GGCTATGGAAGCGCGACTCGATAGCCACTTTATCAAGCCCGATGGCAGCTATGTGCTGTTTCGCGATGATGCCTTTTATG CCGATGTGTCCAATCAGCCGTCCATCAACAGCCCCTGGATGTACCTGCATACAGGCGCCGCCTATAAAACCCAGAAGGTA GTGCGCGAAACCCTGAACACCCTGTGGCTGCCAACGCCAAAAGGCATTCCCGGGCAGGACGATTTGGGACAGATGTCATC CTGGTACGTGTTTTCGGCACTCGGGCTTTACCCCATGCTGCCGGGCCGCGCCGAACTGGTACTGGCCGCCCCCGTGTTTG AAGCGGCCGAGATTGGCAAGCTCAGCATTCGCGCGCCCGGCGCCAGCAACGACAGGCTCTATATCGATGAAGTAGTGCTT AATGGCCATCCAAACCTGAAGAGCTTTATTTCGCCGGAGTATATAGACCACAAAACCAGTCTGGAATTTAAGCTCAGCGA TAAGCCAAACCCGGCCTTTGGTCAGGCCAAAACTGACCGTCCTCCTTCATTTTCACTGACAGGGAACTAA
Upstream 100 bases:
>100_bases CTGGGGCATGGCAATTGATACCCGCCCCAAGGCCATGAGCCCTTACAAAAACTAAAAACGTCCATAGTCAAAAACGGAAA AGGACAAACAAGGACAGACA
Downstream 100 bases:
>100_bases GCCATGGCCTTCGTTTCATCCACCACCCCACAAAACGGCAGCGCTGCACCAGCCCAAAGCCACCAGCAGTTGCTGTTTGG CGCCATGACCAGTTTGTTTT
Product: alpha-1,2-mannosidase family protein
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Secreted Protein; Sugar Hydrolase; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Exported Alpha-1 2-Mannosidase; Antigen; Glycosyltransferase; Alpha-1 2-Mannosidase Protein; Lipoprotein
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MHIPRTLIGIAVSAALGAISLSGCSSEADTNRNQQANPATTAVNATTNANATAPNWIKQPVDFVDPLIGSQGVFNHRQAA NVAVGASLPFGMFNFGPEHAYTEALLNESEGLKKRVLEEKVRIPVSPGGYNYDATRVKGFSFTRLSGTGCLGASGEVPVL PFLEPIKHSPDTDLMDTYYSVGYSHANESVRPGSYRITLDNGVGVNLSATERSGIAEFAFPKDAAAKLLFRTAYNQLGSE KASTRFHPETGEITGSVTSGNFCGYLGEANRYSYYTLHFVAKLDVPVTSSGGWQDDKMRPGASYSEGGTGYGPKGVPELG KGSGLWLELDTSVQQKVTMRVGISYVSEANARQNLIAEQAHKDFAAVEAAANQRWNDTLAKVAVAADPVDAKNRLTTFYT ALYHALHHPNLFSDVNGEYTGFDGTVHRLSQGQQAQYANYSLWDVYRSQLQLISLMEPKVGSDMAQSMLNQANQYGGVWD RWTHNSGPTSVMSGDPSTIAIANFVAFGADDFAVKEAYQSLYKAATEPTQFDLGNTGCPVFCRGQRPSLDQWLSLNYISD QSNSWEGASETLEQVSADFALSQLAARLGKQSQSDEMLARAGYWKNLYNPKATDKLGYIQGRNKDGSWKADFDPASPHLF VEGSPAQYLWMLPFDGAGMSALLGGDAAMEARLDSHFIKPDGSYVLFRDDAFYADVSNQPSINSPWMYLHTGAAYKTQKV VRETLNTLWLPTPKGIPGQDDLGQMSSWYVFSALGLYPMLPGRAELVLAAPVFEAAEIGKLSIRAPGASNDRLYIDEVVL NGHPNLKSFISPEYIDHKTSLEFKLSDKPNPAFGQAKTDRPPSFSLTGN
Sequences:
>Translated_849_residues MHIPRTLIGIAVSAALGAISLSGCSSEADTNRNQQANPATTAVNATTNANATAPNWIKQPVDFVDPLIGSQGVFNHRQAA NVAVGASLPFGMFNFGPEHAYTEALLNESEGLKKRVLEEKVRIPVSPGGYNYDATRVKGFSFTRLSGTGCLGASGEVPVL PFLEPIKHSPDTDLMDTYYSVGYSHANESVRPGSYRITLDNGVGVNLSATERSGIAEFAFPKDAAAKLLFRTAYNQLGSE KASTRFHPETGEITGSVTSGNFCGYLGEANRYSYYTLHFVAKLDVPVTSSGGWQDDKMRPGASYSEGGTGYGPKGVPELG KGSGLWLELDTSVQQKVTMRVGISYVSEANARQNLIAEQAHKDFAAVEAAANQRWNDTLAKVAVAADPVDAKNRLTTFYT ALYHALHHPNLFSDVNGEYTGFDGTVHRLSQGQQAQYANYSLWDVYRSQLQLISLMEPKVGSDMAQSMLNQANQYGGVWD RWTHNSGPTSVMSGDPSTIAIANFVAFGADDFAVKEAYQSLYKAATEPTQFDLGNTGCPVFCRGQRPSLDQWLSLNYISD QSNSWEGASETLEQVSADFALSQLAARLGKQSQSDEMLARAGYWKNLYNPKATDKLGYIQGRNKDGSWKADFDPASPHLF VEGSPAQYLWMLPFDGAGMSALLGGDAAMEARLDSHFIKPDGSYVLFRDDAFYADVSNQPSINSPWMYLHTGAAYKTQKV VRETLNTLWLPTPKGIPGQDDLGQMSSWYVFSALGLYPMLPGRAELVLAAPVFEAAEIGKLSIRAPGASNDRLYIDEVVL NGHPNLKSFISPEYIDHKTSLEFKLSDKPNPAFGQAKTDRPPSFSLTGN >Mature_849_residues MHIPRTLIGIAVSAALGAISLSGCSSEADTNRNQQANPATTAVNATTNANATAPNWIKQPVDFVDPLIGSQGVFNHRQAA NVAVGASLPFGMFNFGPEHAYTEALLNESEGLKKRVLEEKVRIPVSPGGYNYDATRVKGFSFTRLSGTGCLGASGEVPVL PFLEPIKHSPDTDLMDTYYSVGYSHANESVRPGSYRITLDNGVGVNLSATERSGIAEFAFPKDAAAKLLFRTAYNQLGSE KASTRFHPETGEITGSVTSGNFCGYLGEANRYSYYTLHFVAKLDVPVTSSGGWQDDKMRPGASYSEGGTGYGPKGVPELG KGSGLWLELDTSVQQKVTMRVGISYVSEANARQNLIAEQAHKDFAAVEAAANQRWNDTLAKVAVAADPVDAKNRLTTFYT ALYHALHHPNLFSDVNGEYTGFDGTVHRLSQGQQAQYANYSLWDVYRSQLQLISLMEPKVGSDMAQSMLNQANQYGGVWD RWTHNSGPTSVMSGDPSTIAIANFVAFGADDFAVKEAYQSLYKAATEPTQFDLGNTGCPVFCRGQRPSLDQWLSLNYISD QSNSWEGASETLEQVSADFALSQLAARLGKQSQSDEMLARAGYWKNLYNPKATDKLGYIQGRNKDGSWKADFDPASPHLF VEGSPAQYLWMLPFDGAGMSALLGGDAAMEARLDSHFIKPDGSYVLFRDDAFYADVSNQPSINSPWMYLHTGAAYKTQKV VRETLNTLWLPTPKGIPGQDDLGQMSSWYVFSALGLYPMLPGRAELVLAAPVFEAAEIGKLSIRAPGASNDRLYIDEVVL NGHPNLKSFISPEYIDHKTSLEFKLSDKPNPAFGQAKTDRPPSFSLTGN
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92224; Mature: 92224
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIPRTLIGIAVSAALGAISLSGCSSEADTNRNQQANPATTAVNATTNANATAPNWIKQP CCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCC VDFVDPLIGSQGVFNHRQAANVAVGASLPFGMFNFGPEHAYTEALLNESEGLKKRVLEEK HHHHHHHCCCCCCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH VRIPVSPGGYNYDATRVKGFSFTRLSGTGCLGASGEVPVLPFLEPIKHSPDTDLMDTYYS HCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH VGYSHANESVRPGSYRITLDNGVGVNLSATERSGIAEFAFPKDAAAKLLFRTAYNQLGSE HHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCC KASTRFHPETGEITGSVTSGNFCGYLGEANRYSYYTLHFVAKLDVPVTSSGGWQDDKMRP HHCCCCCCCCCCEEEEEECCCCEEECCCCCCEEEEEEEEEEEECCEECCCCCCCCCCCCC GASYSEGGTGYGPKGVPELGKGSGLWLELDTSVQQKVTMRVGISYVSEANARQNLIAEQA CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH HKDFAAVEAAANQRWNDTLAKVAVAADPVDAKNRLTTFYTALYHALHHPNLFSDVNGEYT HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCC GFDGTVHRLSQGQQAQYANYSLWDVYRSQLQLISLMEPKVGSDMAQSMLNQANQYGGVWD CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC RWTHNSGPTSVMSGDPSTIAIANFVAFGADDFAVKEAYQSLYKAATEPTQFDLGNTGCPV CCCCCCCCCCEECCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCE FCRGQRPSLDQWLSLNYISDQSNSWEGASETLEQVSADFALSQLAARLGKQSQSDEMLAR EECCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AGYWKNLYNPKATDKLGYIQGRNKDGSWKADFDPASPHLFVEGSPAQYLWMLPFDGAGMS HHHHHHCCCCCCCCCCCEEECCCCCCCEECCCCCCCCEEEEECCCCCEEEEEEECCCCCH ALLGGDAAMEARLDSHFIKPDGSYVLFRDDAFYADVSNQPSINSPWMYLHTGAAYKTQKV HHHCCCHHHHHHHHHEEECCCCCEEEEECCEEEEECCCCCCCCCCEEEEECCCCHHHHHH VRETLNTLWLPTPKGIPGQDDLGQMSSWYVFSALGLYPMLPGRAELVLAAPVFEAAEIGK HHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCE LSIRAPGASNDRLYIDEVVLNGHPNLKSFISPEYIDHKTSLEFKLSDKPNPAFGQAKTDR EEEECCCCCCCCEEEEEEEECCCCCHHHHCCCHHCCCCCCEEEEECCCCCCCCCCCCCCC PPSFSLTGN CCCEECCCC >Mature Secondary Structure MHIPRTLIGIAVSAALGAISLSGCSSEADTNRNQQANPATTAVNATTNANATAPNWIKQP CCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCC VDFVDPLIGSQGVFNHRQAANVAVGASLPFGMFNFGPEHAYTEALLNESEGLKKRVLEEK HHHHHHHCCCCCCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH VRIPVSPGGYNYDATRVKGFSFTRLSGTGCLGASGEVPVLPFLEPIKHSPDTDLMDTYYS HCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH VGYSHANESVRPGSYRITLDNGVGVNLSATERSGIAEFAFPKDAAAKLLFRTAYNQLGSE HHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCC KASTRFHPETGEITGSVTSGNFCGYLGEANRYSYYTLHFVAKLDVPVTSSGGWQDDKMRP HHCCCCCCCCCCEEEEEECCCCEEECCCCCCEEEEEEEEEEEECCEECCCCCCCCCCCCC GASYSEGGTGYGPKGVPELGKGSGLWLELDTSVQQKVTMRVGISYVSEANARQNLIAEQA CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH HKDFAAVEAAANQRWNDTLAKVAVAADPVDAKNRLTTFYTALYHALHHPNLFSDVNGEYT HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCC GFDGTVHRLSQGQQAQYANYSLWDVYRSQLQLISLMEPKVGSDMAQSMLNQANQYGGVWD CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC RWTHNSGPTSVMSGDPSTIAIANFVAFGADDFAVKEAYQSLYKAATEPTQFDLGNTGCPV CCCCCCCCCCEECCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCE FCRGQRPSLDQWLSLNYISDQSNSWEGASETLEQVSADFALSQLAARLGKQSQSDEMLAR EECCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AGYWKNLYNPKATDKLGYIQGRNKDGSWKADFDPASPHLFVEGSPAQYLWMLPFDGAGMS HHHHHHCCCCCCCCCCCEEECCCCCCCEECCCCCCCCEEEEECCCCCEEEEEEECCCCCH ALLGGDAAMEARLDSHFIKPDGSYVLFRDDAFYADVSNQPSINSPWMYLHTGAAYKTQKV HHHCCCHHHHHHHHHEEECCCCCEEEEECCEEEEECCCCCCCCCCEEEEECCCCHHHHHH VRETLNTLWLPTPKGIPGQDDLGQMSSWYVFSALGLYPMLPGRAELVLAAPVFEAAEIGK HHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCE LSIRAPGASNDRLYIDEVVLNGHPNLKSFISPEYIDHKTSLEFKLSDKPNPAFGQAKTDR EEEECCCCCCCCEEEEEEEECCCCCHHHHCCCHHCCCCCCEEEEECCCCCCCCCCCCCCC PPSFSLTGN CCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA