| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773681
Identifier: 119773681
GI number: 119773681
Start: 666263
End: 668083
Strand: Reverse
Name: 119773681
Synonym: Sama_0541
Alternate gene names: NA
Gene position: 668083-666263 (Counterclockwise)
Preceding gene: 119773684
Following gene: 119773679
Centisome position: 15.51
GC content: 56.18
Gene sequence:
>1821_bases TTGTCCGCCCAAACGCCACAGCTGCAACACTTCTATATTTCTGAAGAACAATCCATCTACCTGCTCAAGGCCGACGACGC CCGTAAGCACAAGGCTTGGGTACGCCTGTGTAAACAGCAGCTGTCCAAATTGGGTTACCGGGACATAGAATTTATTGGCA AGGGCGCCTATGGCTTTGTGTTTGCGGGCATCAATGAGGCCAGCGAAGCCCACGTATTCAAGTTTTCCCGTATTACTCTG CCCCAGCAAATCCAGGACAGGCTCGAAGAAGAAGCCTTTATGCTGTCACACTGTCGCCACCCCAATGTGCCGCCGCTGGT CAAATTTGAACGGGTCGGCAAACAGGGCATTCTGGTGATGGCTCGGGCACCGGGTGAAGAGCTGGAGCAGCTGTGTCGTC GCCGCGGTGCTCTGCCTATTCCCATGATCATGAGCATTGCGCGCCAGCTGGCCGATTTGCTTGTTTATCTTAGAACGGGA CGTCCGCTGGTCCATGGCGACATCAAGCCCTCCAACCTGGTTTACGATGAAACCACAGGTCATTTATCGCTGATTGACTG GGGCTCGGCCGTGTTTGCCCAGCGGGACGAACTGGGCCGACCGGTGGAGGAACATGTAATGAATCTGCTCTCCAGCGACC AGCAGCATACCAATGCCCGCATGGGGGATGTGTATTTTATCGGCGATGAGCAGCTCAGTGGCGCCCTCTCAAGCCCACGA TTCGACGAGCAGGGAGTAGCCGCTACCCTCTATGCCCTGGCGTCTGGACAAGCCAGCCGTTTTGGCTCCCGAGTTATTCC GCCCACCAGCATTGGCCTGCCCATGGAGCTTGCCCGCACCCTGGAGGCCATGCTCAGTGATGATGCCCAGACCCGCAACC GGGGCGGTGATTATTTTCTTCGCAGTATGCGCCACAGTCACCGGCTGCTGTTACCGGATATCCCCCGCCCGGAAGCCATG GCCGAGATCCCCGTGTGGGTACAGAATCGGGGTAAAGAGGTCGATACCGTGAGCTACAGCTCGCGCAAGTCCTTTTTGCG CGAGCACAATGCCGATGAGCCCATCGCCCGGGTTGATGATGTGCAACTGGATAAGTACTACCGCAATTTTCTGGCCGGCA TGGGGGATACCGAGAAGGGCTTTATTGCCGCGGTGGGCAGATTGGGGCAATACCCCATAGTCGGGGGGCTCGCGCTCCAT TGGCAGCAGGATGGCGTATTTATCGACTCCAATCTGGCGCTGCACGACGCCACGCTCAAACAGGCATTGGTGCAGGCAGT AAACAACATGGTCACCCTCGCCCGGGGCATAGGCCGTCTGGGCACCTTCAAAGCCTGCTTTTTTAATGCGAGGGACACCT TGCACATCAGCCGCGATCCCGTCAGCGGCACCTTTGTGGCAAGCCCCGCTCAGCAGTTACCCTTTGAAGTGGGCGATGTA CCCATGTTGGAAGACAAGTCGCGGCTGCATTCGTACTTTGAAGACGGCAAAGATCCGGACGAAAACCTGGAGCTACCCGC CGAAATCATGACCGAGCTTGGCTGGCTAAACCAAATCCATCACACCGGCTGTATCATCTTTGAGGCCCTTGGCGATCATT TGAAGATCCACAGCTACTTAAAGCTGCTTAACCCGCGCAAGCAGGCCGCATTCCGGGCGAGTCTCGACAGAATTTTGCAC CATGTGGATAAGATTCACGGTAACGGAGTCTCTGGCTTTATGAAGCTGCCCTACAAGAACACCCGCAGGTTCGCCAAAAT CAGCACCAAACCCGAGGCCTTTTATCCAAAAGATCCCAGGCAGTTACATTCCGAAACCTGA
Upstream 100 bases:
>100_bases GCGGTCAAAAAACTTGGGTAGGCAGCCGCTAAATACCTTGCCTGTCTGCGGCGGATATGGCTTTAATGATGGATTAATAT CAGCGCCGGGGATCCCGTTT
Downstream 100 bases:
>100_bases ATCATCGAGTGTGGAAAAAGACCCGCTGCTGAAGCGTGCGGCCACTAAACCCAGCGCACAGTTCAGTCTCTGGGCTTGTG GGTGTCAGACTGCGCAGTAT
Product: serine/threonine protein kinase
Products: NA
Alternate protein names: Protein Kinase; Non-Specific Serine/Threonine Protein Kinase; Serine/Threonine Kinase
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MSAQTPQLQHFYISEEQSIYLLKADDARKHKAWVRLCKQQLSKLGYRDIEFIGKGAYGFVFAGINEASEAHVFKFSRITL PQQIQDRLEEEAFMLSHCRHPNVPPLVKFERVGKQGILVMARAPGEELEQLCRRRGALPIPMIMSIARQLADLLVYLRTG RPLVHGDIKPSNLVYDETTGHLSLIDWGSAVFAQRDELGRPVEEHVMNLLSSDQQHTNARMGDVYFIGDEQLSGALSSPR FDEQGVAATLYALASGQASRFGSRVIPPTSIGLPMELARTLEAMLSDDAQTRNRGGDYFLRSMRHSHRLLLPDIPRPEAM AEIPVWVQNRGKEVDTVSYSSRKSFLREHNADEPIARVDDVQLDKYYRNFLAGMGDTEKGFIAAVGRLGQYPIVGGLALH WQQDGVFIDSNLALHDATLKQALVQAVNNMVTLARGIGRLGTFKACFFNARDTLHISRDPVSGTFVASPAQQLPFEVGDV PMLEDKSRLHSYFEDGKDPDENLELPAEIMTELGWLNQIHHTGCIIFEALGDHLKIHSYLKLLNPRKQAAFRASLDRILH HVDKIHGNGVSGFMKLPYKNTRRFAKISTKPEAFYPKDPRQLHSET
Sequences:
>Translated_606_residues MSAQTPQLQHFYISEEQSIYLLKADDARKHKAWVRLCKQQLSKLGYRDIEFIGKGAYGFVFAGINEASEAHVFKFSRITL PQQIQDRLEEEAFMLSHCRHPNVPPLVKFERVGKQGILVMARAPGEELEQLCRRRGALPIPMIMSIARQLADLLVYLRTG RPLVHGDIKPSNLVYDETTGHLSLIDWGSAVFAQRDELGRPVEEHVMNLLSSDQQHTNARMGDVYFIGDEQLSGALSSPR FDEQGVAATLYALASGQASRFGSRVIPPTSIGLPMELARTLEAMLSDDAQTRNRGGDYFLRSMRHSHRLLLPDIPRPEAM AEIPVWVQNRGKEVDTVSYSSRKSFLREHNADEPIARVDDVQLDKYYRNFLAGMGDTEKGFIAAVGRLGQYPIVGGLALH WQQDGVFIDSNLALHDATLKQALVQAVNNMVTLARGIGRLGTFKACFFNARDTLHISRDPVSGTFVASPAQQLPFEVGDV PMLEDKSRLHSYFEDGKDPDENLELPAEIMTELGWLNQIHHTGCIIFEALGDHLKIHSYLKLLNPRKQAAFRASLDRILH HVDKIHGNGVSGFMKLPYKNTRRFAKISTKPEAFYPKDPRQLHSET >Mature_605_residues SAQTPQLQHFYISEEQSIYLLKADDARKHKAWVRLCKQQLSKLGYRDIEFIGKGAYGFVFAGINEASEAHVFKFSRITLP QQIQDRLEEEAFMLSHCRHPNVPPLVKFERVGKQGILVMARAPGEELEQLCRRRGALPIPMIMSIARQLADLLVYLRTGR PLVHGDIKPSNLVYDETTGHLSLIDWGSAVFAQRDELGRPVEEHVMNLLSSDQQHTNARMGDVYFIGDEQLSGALSSPRF DEQGVAATLYALASGQASRFGSRVIPPTSIGLPMELARTLEAMLSDDAQTRNRGGDYFLRSMRHSHRLLLPDIPRPEAMA EIPVWVQNRGKEVDTVSYSSRKSFLREHNADEPIARVDDVQLDKYYRNFLAGMGDTEKGFIAAVGRLGQYPIVGGLALHW QQDGVFIDSNLALHDATLKQALVQAVNNMVTLARGIGRLGTFKACFFNARDTLHISRDPVSGTFVASPAQQLPFEVGDVP MLEDKSRLHSYFEDGKDPDENLELPAEIMTELGWLNQIHHTGCIIFEALGDHLKIHSYLKLLNPRKQAAFRASLDRILHH VDKIHGNGVSGFMKLPYKNTRRFAKISTKPEAFYPKDPRQLHSET
Specific function: Unknown
COG id: COG0515
COG function: function code RTKL; Serine/threonine protein kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68182; Mature: 68051
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: PS00108 PROTEIN_KINASE_ST ; PS50011 PROTEIN_KINASE_DOM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQTPQLQHFYISEEQSIYLLKADDARKHKAWVRLCKQQLSKLGYRDIEFIGKGAYGFV CCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEE FAGINEASEAHVFKFSRITLPQQIQDRLEEEAFMLSHCRHPNVPPLVKFERVGKQGILVM EECCCCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEE ARAPGEELEQLCRRRGALPIPMIMSIARQLADLLVYLRTGRPLVHGDIKPSNLVYDETTG EECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCC HLSLIDWGSAVFAQRDELGRPVEEHVMNLLSSDQQHTNARMGDVYFIGDEQLSGALSSPR CEEEEECCHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCCCCCEEEECCHHHHCCCCCCC FDEQGVAATLYALASGQASRFGSRVIPPTSIGLPMELARTLEAMLSDDAQTRNRGGDYFL CCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHH RSMRHSHRLLLPDIPRPEAMAEIPVWVQNRGKEVDTVSYSSRKSFLREHNADEPIARVDD HHHHCCCCEECCCCCCCHHHHHCCHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCHHHCC VQLDKYYRNFLAGMGDTEKGFIAAVGRLGQYPIVGGLALHWQQDGVFIDSNLALHDATLK CHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHH QALVQAVNNMVTLARGIGRLGTFKACFFNARDTLHISRDPVSGTFVASPAQQLPFEVGDV HHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCEEEEECCCCCCCEEECCHHHCCCCCCCC PMLEDKSRLHSYFEDGKDPDENLELPAEIMTELGWLNQIHHTGCIIFEALGDHLKIHSYL CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEHHCCHHHHHHHH KLLNPRKQAAFRASLDRILHHVDKIHGNGVSGFMKLPYKNTRRFAKISTKPEAFYPKDPR HHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHCCCEEEECCCCCCCCCCCHH QLHSET HHCCCC >Mature Secondary Structure SAQTPQLQHFYISEEQSIYLLKADDARKHKAWVRLCKQQLSKLGYRDIEFIGKGAYGFV CCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEE FAGINEASEAHVFKFSRITLPQQIQDRLEEEAFMLSHCRHPNVPPLVKFERVGKQGILVM EECCCCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEE ARAPGEELEQLCRRRGALPIPMIMSIARQLADLLVYLRTGRPLVHGDIKPSNLVYDETTG EECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCC HLSLIDWGSAVFAQRDELGRPVEEHVMNLLSSDQQHTNARMGDVYFIGDEQLSGALSSPR CEEEEECCHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCCCCCEEEECCHHHHCCCCCCC FDEQGVAATLYALASGQASRFGSRVIPPTSIGLPMELARTLEAMLSDDAQTRNRGGDYFL CCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHH RSMRHSHRLLLPDIPRPEAMAEIPVWVQNRGKEVDTVSYSSRKSFLREHNADEPIARVDD HHHHCCCCEECCCCCCCHHHHHCCHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCHHHCC VQLDKYYRNFLAGMGDTEKGFIAAVGRLGQYPIVGGLALHWQQDGVFIDSNLALHDATLK CHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHH QALVQAVNNMVTLARGIGRLGTFKACFFNARDTLHISRDPVSGTFVASPAQQLPFEVGDV HHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCEEEEECCCCCCCEEECCHHHCCCCCCCC PMLEDKSRLHSYFEDGKDPDENLELPAEIMTELGWLNQIHHTGCIIFEALGDHLKIHSYL CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEHHCCHHHHHHHH KLLNPRKQAAFRASLDRILHHVDKIHGNGVSGFMKLPYKNTRRFAKISTKPEAFYPKDPR HHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHCCCEEEECCCCCCCCCCCHH QLHSET HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA