Click here to switch to the map view.

The map label for this gene is 119773668

Identifier: 119773668

GI number: 119773668

Start: 651752

End: 652366

Strand: Reverse

Name: 119773668

Synonym: Sama_0528

Alternate gene names: NA

Gene position: 652366-651752 (Counterclockwise)

Preceding gene: 119773675

Following gene: 119773667

Centisome position: 15.15

GC content: 58.54

Gene sequence:

>615_bases
ATGACATCCAAACTAATCGGGGCTCTTGGCCTTTGGCTGATAGCCACCCATGGTGCCCAGGCGACAACGGCACCCGCCAT
GCCACCACAGGCAGCACTTTGCGGCAGTTGCCACGGCTCCCAGGGCCTGGGAGTAGAACCGCTGGGACCGCGTCTGGCGG
GATTGTCTAGCGAGTATATTCAAAAGCAAATCAAAGATTTTCAATCTTCAAAGCGGCAAAACCCCACCATGAGGCCCATG
GCCATGACGCTGCAGGGCGATGCCTTGATAGCCCAGGTCGCGGACTATTTTGCGGCGCAAGCCGTACCCAGCGTCAGCAT
TCAGCGCCGCGGTGAGGAAGTGACATTCCAGGATAGCGCAGAGCGACTTGCCTACCAGGGAGATTGGTCCCGTGAGCTAC
CGGCCTGTGTCACCTGCCATGGCCCATCGGGCATCGGCGCTGGCACCTTCCCCCGTCTTGCCGGACAACAAGCCAGCTAC
CTCAAGAGTCAGCTACTGGCATGGCAGTCAGGAACGCGTCAGGGTGACAGTGACGGCATGATGGCCAATGTTGCCAATAA
GCTCTCGGCGGCGGAAATTGACGCCATAGCCCACTATTTTGCCAACCTGAAGTAA

Upstream 100 bases:

>100_bases
GACGAGTCAATCACGCTGCCGTTTCGCCTTCCATTAAATTCTTCTAATATTATTATTTTCGGTTTATGCTGAATATCTTT
AATGATGCGGGGAAGAATTC

Downstream 100 bases:

>100_bases
GGATGCCCGCCATGAAACCTGCACTGATGTTGATGCTGGGCGCCGCTGCGGTGACAGCCGCCCATGCACAGTCCCCTGAC
ACCAGCCTGCCCGATCGCCA

Product: cytochrome c family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MTSKLIGALGLWLIATHGAQATTAPAMPPQAALCGSCHGSQGLGVEPLGPRLAGLSSEYIQKQIKDFQSSKRQNPTMRPM
AMTLQGDALIAQVADYFAAQAVPSVSIQRRGEEVTFQDSAERLAYQGDWSRELPACVTCHGPSGIGAGTFPRLAGQQASY
LKSQLLAWQSGTRQGDSDGMMANVANKLSAAEIDAIAHYFANLK

Sequences:

>Translated_204_residues
MTSKLIGALGLWLIATHGAQATTAPAMPPQAALCGSCHGSQGLGVEPLGPRLAGLSSEYIQKQIKDFQSSKRQNPTMRPM
AMTLQGDALIAQVADYFAAQAVPSVSIQRRGEEVTFQDSAERLAYQGDWSRELPACVTCHGPSGIGAGTFPRLAGQQASY
LKSQLLAWQSGTRQGDSDGMMANVANKLSAAEIDAIAHYFANLK
>Mature_203_residues
TSKLIGALGLWLIATHGAQATTAPAMPPQAALCGSCHGSQGLGVEPLGPRLAGLSSEYIQKQIKDFQSSKRQNPTMRPMA
MTLQGDALIAQVADYFAAQAVPSVSIQRRGEEVTFQDSAERLAYQGDWSRELPACVTCHGPSGIGAGTFPRLAGQQASYL
KSQLLAWQSGTRQGDSDGMMANVANKLSAAEIDAIAHYFANLK

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor in an anaerobic electron transport chain [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 cytochrome c domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 21594; Mature: 21463

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKLIGALGLWLIATHGAQATTAPAMPPQAALCGSCHGSQGLGVEPLGPRLAGLSSEYI
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHH
QKQIKDFQSSKRQNPTMRPMAMTLQGDALIAQVADYFAAQAVPSVSIQRRGEEVTFQDSA
HHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHH
ERLAYQGDWSRELPACVTCHGPSGIGAGTFPRLAGQQASYLKSQLLAWQSGTRQGDSDGM
HHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCH
MANVANKLSAAEIDAIAHYFANLK
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSKLIGALGLWLIATHGAQATTAPAMPPQAALCGSCHGSQGLGVEPLGPRLAGLSSEYI
CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHH
QKQIKDFQSSKRQNPTMRPMAMTLQGDALIAQVADYFAAQAVPSVSIQRRGEEVTFQDSA
HHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHH
ERLAYQGDWSRELPACVTCHGPSGIGAGTFPRLAGQQASYLKSQLLAWQSGTRQGDSDGM
HHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCH
MANVANKLSAAEIDAIAHYFANLK
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA