BacMap

Definition	Shewanella amazonensis SB2B chromosome, complete genome.
Accession	NC_008700
Length	4,306,142

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The map label for this gene is hbdH1 [H]

Identifier: 119773657

GI number: 119773657

Start: 636932

End: 637732

Strand: Reverse

Name: hbdH1 [H]

Synonym: Sama_0517

Alternate gene names: 119773657

Gene position: 637732-636932 (Counterclockwise)

Preceding gene: 119773663

Following gene: 119773654

Centisome position: 14.81

GC content: 56.43

Gene sequence:

>801_bases
ATGTCGGGTGGACAAAGGAGTTTAGAAGGCAAGGTTGGGCTTATCACAGGCTCCACCAGTGGGATTGGCCTGGCCACGGC
TCAGGTACTGGCCGAGCAGGGTTGCAACCTGATATTGCATGGGCTGTTGCCTGAGGATGAAGGGCAATCTATGGCGGCCG
ACTTTGCGGCGCAGTACCGCATTCGCACCTTTTTCAGCAATGCAGACTTACGCCAGCCAGAGAGCATCCATCGCTTTATG
GCAGAAGGCACAAAAGCACTCGGCAGCATCGACATTCTTATCAACAATGCCGGGATTCAGCACACCGACTCAGTGGCCAG
TTTCCCGATTGAAAAATGGAACGATATCATTGCGATAAATCTGTCTTCAGCCTTTCACACCATGCAACAGGCCGTACCCG
CCATGGCGCAAAAGCGCTGGGGCCGGATCATCAATATCGCCTCGGTGCACGGCTTGGTGGCATCGGTGAACAAGGCCGCC
TATTGCGCCGCCAAGCACGGTATTGTGGGCCTGACCAAGGTGGTTGCCATCGAGTGCGCCGAGCAGGGCATTACCGTCAA
TGCCATCTGCCCCGGCTGGGTTGATACCCCTCTCATCAATAAGCAGATAGAAGCCGTCGCCAACACTAAGGGGCTGGACT
ATCACGAAGCCAGATACCAATTGGTGACAGCCAAACAGCCGCTGCCGGAAATGCTCGACCCCAGGCAAATAGGTGAATTT
GCGCTGTTCCTCTGTGGTGATGCTGCCCGCGGCATCACAGGGGCTTCACTCGCCATGGACGGGGGCTGGACGGCCCAGTA
A

Upstream 100 bases:

>100_bases
AATCGCAAGTCTGCCGGCCCGGGCGCCCGCGCCCTGCGCGCGAAAAACTCCGGCCTGGCGGCCTTGCATTACATGCACAG
AGTAACGGGAGACACCAGTA

Downstream 100 bases:

>100_bases
CCGCGGTCAGGTCAGCAAGAGGCCGGGGCATTGGCACTGGAGTGCCCAAAAACAAAAAGCTCCCTGACGGGAGCTTTTTG
ATTCTGACCTTTCGATTCAG

Product: D-beta-hydroxybutyrate dehydrogenase

Products: NA

Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSGGQRSLEGKVGLITGSTSGIGLATAQVLAEQGCNLILHGLLPEDEGQSMAADFAAQYRIRTFFSNADLRQPESIHRFM
AEGTKALGSIDILINNAGIQHTDSVASFPIEKWNDIIAINLSSAFHTMQQAVPAMAQKRWGRIINIASVHGLVASVNKAA
YCAAKHGIVGLTKVVAIECAEQGITVNAICPGWVDTPLINKQIEAVANTKGLDYHEARYQLVTAKQPLPEMLDPRQIGEF
ALFLCGDAARGITGASLAMDGGWTAQ

Sequences:

>Translated_266_residues
MSGGQRSLEGKVGLITGSTSGIGLATAQVLAEQGCNLILHGLLPEDEGQSMAADFAAQYRIRTFFSNADLRQPESIHRFM
AEGTKALGSIDILINNAGIQHTDSVASFPIEKWNDIIAINLSSAFHTMQQAVPAMAQKRWGRIINIASVHGLVASVNKAA
YCAAKHGIVGLTKVVAIECAEQGITVNAICPGWVDTPLINKQIEAVANTKGLDYHEARYQLVTAKQPLPEMLDPRQIGEF
ALFLCGDAARGITGASLAMDGGWTAQ
>Mature_265_residues
SGGQRSLEGKVGLITGSTSGIGLATAQVLAEQGCNLILHGLLPEDEGQSMAADFAAQYRIRTFFSNADLRQPESIHRFMA
EGTKALGSIDILINNAGIQHTDSVASFPIEKWNDIIAINLSSAFHTMQQAVPAMAQKRWGRIINIASVHGLVASVNKAAY
CAAKHGIVGLTKVVAIECAEQGITVNAICPGWVDTPLINKQIEAVANTKGLDYHEARYQLVTAKQPLPEMLDPRQIGEFA
LFLCGDAARGITGASLAMDGGWTAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI4758504, Length=220, Percent_Identity=32.2727272727273, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI4504505, Length=268, Percent_Identity=27.2388059701493, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI31542939, Length=256, Percent_Identity=29.296875, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI32483357, Length=262, Percent_Identity=26.3358778625954, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=27.0992366412214, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI15277342, Length=276, Percent_Identity=28.2608695652174, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI40254992, Length=254, Percent_Identity=28.3464566929134, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI83715985, Length=249, Percent_Identity=28.5140562248996, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI20149619, Length=213, Percent_Identity=27.2300469483568, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI142976729, Length=204, Percent_Identity=28.921568627451, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI40807363, Length=197, Percent_Identity=29.4416243654822, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=23.921568627451, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=26.8421052631579, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=25.390625, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI226371731, Length=191, Percent_Identity=28.7958115183246, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI224922801, Length=180, Percent_Identity=31.6666666666667, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI25282469, Length=242, Percent_Identity=25.6198347107438, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=202, Percent_Identity=26.2376237623762, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI126723191, Length=198, Percent_Identity=26.2626262626263, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=198, Percent_Identity=26.7676767676768, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=267, Percent_Identity=25.8426966292135, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI126723750, Length=265, Percent_Identity=24.5283018867925, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI225579078, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=35.6589147286822, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=34.2412451361868, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=32.0610687022901, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=30.859375, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=31.640625, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=28.7937743190661, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=27.6923076923077, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=26.2745098039216, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=26.5625, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789057, Length=219, Percent_Identity=27.8538812785388, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789378, Length=196, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367365, Length=260, Percent_Identity=25.7692307692308, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=265, Percent_Identity=29.811320754717, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=34.3589743589744, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=266, Percent_Identity=29.6992481203008, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=29.7297297297297, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=213, Percent_Identity=32.8638497652582, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=27.906976744186, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=266, Percent_Identity=25.187969924812, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=30.1115241635688, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=26.7676767676768, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=28.7234042553192, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=30.1115241635688, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=27.1794871794872, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=29.5454545454545, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=30.4568527918782, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=284, Percent_Identity=26.7605633802817, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=28.643216080402, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=27.4436090225564, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=26.2172284644195, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=283, Percent_Identity=26.5017667844523, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=27.0992366412214, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=280, Percent_Identity=26.4285714285714, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=195, Percent_Identity=31.7948717948718, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=27.9245283018868, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=207, Percent_Identity=29.4685990338164, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=26.6917293233083, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=26.1029411764706, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=25.0950570342205, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=276, Percent_Identity=26.8115942028986, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI86565303, Length=226, Percent_Identity=26.5486725663717, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=27.4436090225564, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=214, Percent_Identity=26.1682242990654, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=31.9587628865979, Blast_Score=90, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6324126, Length=261, Percent_Identity=26.0536398467433, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=206, Percent_Identity=29.6116504854369, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=30.7692307692308, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24639444, Length=262, Percent_Identity=29.0076335877863, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21355319, Length=266, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=28.6821705426357, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=31.9587628865979, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21357041, Length=266, Percent_Identity=29.3233082706767, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571526, Length=263, Percent_Identity=29.6577946768061, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=30.8080808080808, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17737361, Length=204, Percent_Identity=27.9411764705882, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24584744, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI28574402, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=29.6875, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644337, Length=258, Percent_Identity=29.4573643410853, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21355631, Length=175, Percent_Identity=27.4285714285714, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=26.4227642276423, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=27.979274611399, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17647419, Length=237, Percent_Identity=24.4725738396624, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281364892, Length=179, Percent_Identity=26.8156424581006, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24649181, Length=214, Percent_Identity=24.2990654205607, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643142, Length=259, Percent_Identity=24.7104247104247, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.30 [H]

Molecular weight: Translated: 28312; Mature: 28181

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGQRSLEGKVGLITGSTSGIGLATAQVLAEQGCNLILHGLLPEDEGQSMAADFAAQYR
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
IRTFFSNADLRQPESIHRFMAEGTKALGSIDILINNAGIQHTDSVASFPIEKWNDIIAIN
HHHHCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCHHHCCCEEEEE
LSSAFHTMQQAVPAMAQKRWGRIINIASVHGLVASVNKAAYCAAKHGIVGLTKVVAIECA
EHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EQGITVNAICPGWVDTPLINKQIEAVANTKGLDYHEARYQLVTAKQPLPEMLDPRQIGEF
HCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCHHHCCHHHHHHE
ALFLCGDAARGITGASLAMDGGWTAQ
EEEEECCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SGGQRSLEGKVGLITGSTSGIGLATAQVLAEQGCNLILHGLLPEDEGQSMAADFAAQYR
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
IRTFFSNADLRQPESIHRFMAEGTKALGSIDILINNAGIQHTDSVASFPIEKWNDIIAIN
HHHHCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCHHHCCCEEEEE
LSSAFHTMQQAVPAMAQKRWGRIINIASVHGLVASVNKAAYCAAKHGIVGLTKVVAIECA
EHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EQGITVNAICPGWVDTPLINKQIEAVANTKGLDYHEARYQLVTAKQPLPEMLDPRQIGEF
HCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCHHHCCHHHHHHE
ALFLCGDAARGITGASLAMDGGWTAQ
EEEEECCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA