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The map label for this gene is yncB [H]

Identifier: 119773615

GI number: 119773615

Start: 585205

End: 586251

Strand: Reverse

Name: yncB [H]

Synonym: Sama_0475

Alternate gene names: 119773615

Gene position: 586251-585205 (Counterclockwise)

Preceding gene: 119773616

Following gene: 119773585

Centisome position: 13.61

GC content: 58.74

Gene sequence:

>1047_bases
ATGACTGATTCCATCAACCGCCGTATCGTGTTGGCTTCACGCCCTGTTGGCGCCCCCACCAGCGATAACTTCCGCCTGGA
AACCCTGGCCAAACCCGAACCCAAGCAGGGTGAAGTGCTGCTTCGCACCATCTACCTGTCGCTTGACCCATACATGCGTG
GCCGTATGAGCGATGCCAAGTCGTACGCCGAGCCCGTAGCCCTGGGTGAAGTGATGATTGGCGGCACCGTCTGCCAGGTG
GAAGTGTCCAACCATCCTGACTTTGCCGTGGGTGAGTGGGTACTCGCCTACAACGTGGGCTGGCAAAGCTATGCCGTGTC
CGGCGCCGAAGGTCTGCTTAAGTTGGGCGCCAACCCAAGCCATCCCTCCTATGCGCTTGGCGTGATGGGTATGCCCGGCT
TTACCGCTTACATGGGCCTGCTGGACATTGGCGCGCCCAAAGCCGGTGAAACCATAGTGGTGGCCGCTGCCACAGGGCCT
GTGGGCGCTACCGTGGGCCAGATTGGCAAGCTCAAGGGCGCGCGGGTGGTAGGCATTGCCGGCGGCGCCGACAAGTGTCG
CCATGCCGTTGAAGTGCTTGGCTTTGATGCCTGTATCGACCACAAGTCAGCCAACTTTGCTGCCGAGCTGGCCGCCGCCT
GCCCCGATGGCATCGACGTGTACTTTGAGAATGTGGGCGGGGCCGTGTTCGATGCAGTTATACCACTCTTGAATACCAAT
GCCCGCATTCCAGTGTGCGGCCTGATTTCCCAGTACAACGCCACCGAGCTGCCTGCCGGACCAGACAGACTTTCGCTGCT
GATGGGGCTGATTTTGACCAAGCGCATCAAGGTGCAGGGCTTTATCATTTTTGATGATTACGGCCACCGTTACGGTGAGT
TTGAACAGGACATGAGCCAGTGGCTGGCCGAGGGTAAAATCCAGTACCGCGAGCAAATTGAGCAGGGTCTGGAAAACGCC
CCCGAGCAGCTGATTGGTCTCCTCGAGGGCAAGAACTTCGGCAAACTGGTTATCCAGGTGAATCAGCCTCTCTCAATGTT
TGCCTGA

Upstream 100 bases:

>100_bases
CAAACACTAGAATAGCCCCAAATCCAAGCCGCTATTTCGATAGCGGATTTTTTGAAACAATCACTAGACGACTGGTCTAA
TTTAAGTAAAGGATAGAGTT

Downstream 100 bases:

>100_bases
CTCCAGGGCTCAAGCCTTAAGGCCGCAGTAAAGGAATCTGGCTCCAAGCGTTGAGAGTGGAGTAATCAGGAAAAATTATC
GATGAAAAAAGCCTGTCCAA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTDSINRRIVLASRPVGAPTSDNFRLETLAKPEPKQGEVLLRTIYLSLDPYMRGRMSDAKSYAEPVALGEVMIGGTVCQV
EVSNHPDFAVGEWVLAYNVGWQSYAVSGAEGLLKLGANPSHPSYALGVMGMPGFTAYMGLLDIGAPKAGETIVVAAATGP
VGATVGQIGKLKGARVVGIAGGADKCRHAVEVLGFDACIDHKSANFAAELAAACPDGIDVYFENVGGAVFDAVIPLLNTN
ARIPVCGLISQYNATELPAGPDRLSLLMGLILTKRIKVQGFIIFDDYGHRYGEFEQDMSQWLAEGKIQYREQIEQGLENA
PEQLIGLLEGKNFGKLVIQVNQPLSMFA

Sequences:

>Translated_348_residues
MTDSINRRIVLASRPVGAPTSDNFRLETLAKPEPKQGEVLLRTIYLSLDPYMRGRMSDAKSYAEPVALGEVMIGGTVCQV
EVSNHPDFAVGEWVLAYNVGWQSYAVSGAEGLLKLGANPSHPSYALGVMGMPGFTAYMGLLDIGAPKAGETIVVAAATGP
VGATVGQIGKLKGARVVGIAGGADKCRHAVEVLGFDACIDHKSANFAAELAAACPDGIDVYFENVGGAVFDAVIPLLNTN
ARIPVCGLISQYNATELPAGPDRLSLLMGLILTKRIKVQGFIIFDDYGHRYGEFEQDMSQWLAEGKIQYREQIEQGLENA
PEQLIGLLEGKNFGKLVIQVNQPLSMFA
>Mature_347_residues
TDSINRRIVLASRPVGAPTSDNFRLETLAKPEPKQGEVLLRTIYLSLDPYMRGRMSDAKSYAEPVALGEVMIGGTVCQVE
VSNHPDFAVGEWVLAYNVGWQSYAVSGAEGLLKLGANPSHPSYALGVMGMPGFTAYMGLLDIGAPKAGETIVVAAATGPV
GATVGQIGKLKGARVVGIAGGADKCRHAVEVLGFDACIDHKSANFAAELAAACPDGIDVYFENVGGAVFDAVIPLLNTNA
RIPVCGLISQYNATELPAGPDRLSLLMGLILTKRIKVQGFIIFDDYGHRYGEFEQDMSQWLAEGKIQYREQIEQGLENAP
EQLIGLLEGKNFGKLVIQVNQPLSMFA

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=352, Percent_Identity=37.2159090909091, Blast_Score=228, Evalue=5e-60,
Organism=Homo sapiens, GI226246680, Length=352, Percent_Identity=37.2159090909091, Blast_Score=228, Evalue=5e-60,
Organism=Homo sapiens, GI22748929, Length=352, Percent_Identity=37.2159090909091, Blast_Score=228, Evalue=5e-60,
Organism=Homo sapiens, GI226059159, Length=338, Percent_Identity=38.1656804733728, Blast_Score=215, Evalue=6e-56,
Organism=Homo sapiens, GI226059133, Length=338, Percent_Identity=38.1656804733728, Blast_Score=215, Evalue=6e-56,
Organism=Homo sapiens, GI226056130, Length=310, Percent_Identity=36.7741935483871, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI28557745, Length=343, Percent_Identity=28.2798833819242, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI226510941, Length=335, Percent_Identity=69.5522388059701, Blast_Score=493, Evalue=1e-141,
Organism=Caenorhabditis elegans, GI133901712, Length=360, Percent_Identity=31.9444444444444, Blast_Score=176, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI133901710, Length=360, Percent_Identity=31.9444444444444, Blast_Score=176, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6323504, Length=338, Percent_Identity=30.1775147928994, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37159; Mature: 37028

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSINRRIVLASRPVGAPTSDNFRLETLAKPEPKQGEVLLRTIYLSLDPYMRGRMSDAK
CCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCHHHHCCHHHHH
SYAEPVALGEVMIGGTVCQVEVSNHPDFAVGEWVLAYNVGWQSYAVSGAEGLLKLGANPS
HHHCHHHHCEEEECCEEEEEEECCCCCCCCCCEEEEEECCCHHEECCCCHHHHEECCCCC
HPSYALGVMGMPGFTAYMGLLDIGAPKAGETIVVAAATGPVGATVGQIGKLKGARVVGIA
CCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEC
GGADKCRHAVEVLGFDACIDHKSANFAAELAAACPDGIDVYFENVGGAVFDAVIPLLNTN
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEHHCCHHHHHHHHHHHCCC
ARIPVCGLISQYNATELPAGPDRLSLLMGLILTKRIKVQGFIIFDDYGHRYGEFEQDMSQ
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCHHHHHHHH
WLAEGKIQYREQIEQGLENAPEQLIGLLEGKNFGKLVIQVNQPLSMFA
HHHCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCHHHCC
>Mature Secondary Structure 
TDSINRRIVLASRPVGAPTSDNFRLETLAKPEPKQGEVLLRTIYLSLDPYMRGRMSDAK
CCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCHHHHCCHHHHH
SYAEPVALGEVMIGGTVCQVEVSNHPDFAVGEWVLAYNVGWQSYAVSGAEGLLKLGANPS
HHHCHHHHCEEEECCEEEEEEECCCCCCCCCCEEEEEECCCHHEECCCCHHHHEECCCCC
HPSYALGVMGMPGFTAYMGLLDIGAPKAGETIVVAAATGPVGATVGQIGKLKGARVVGIA
CCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEC
GGADKCRHAVEVLGFDACIDHKSANFAAELAAACPDGIDVYFENVGGAVFDAVIPLLNTN
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEHHCCHHHHHHHHHHHCCC
ARIPVCGLISQYNATELPAGPDRLSLLMGLILTKRIKVQGFIIFDDYGHRYGEFEQDMSQ
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCHHHHHHHH
WLAEGKIQYREQIEQGLENAPEQLIGLLEGKNFGKLVIQVNQPLSMFA
HHHCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]