Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is maeB [H]
Identifier: 119773588
GI number: 119773588
Start: 553592
End: 554839
Strand: Direct
Name: maeB [H]
Synonym: Sama_0448
Alternate gene names: 119773588
Gene position: 553592-554839 (Clockwise)
Preceding gene: 119773587
Following gene: 119773589
Centisome position: 12.86
GC content: 54.97
Gene sequence:
>1248_bases ATGGCAGACCTTCGTCAACAAGCACTCGATTATCATGAATTTCCGGTTCCTGGAAAAATGGCTGTGTGTCTCACCAAACC CGCTGAAACCAGTATGGATCTGGCGCTGGCTTACAGCCCGGGTGTGGCCGAGCCGGTGCGTGAAATCGCCTCTAATCCTG CCGACGCATACCGCTACACCGCCAAGGGCAACACGGTTGCCGTGATTTCCAACGGTACCGCCATTTTGGGTCTGGGAAAC CTGGGACCATTGGCCTCCAAGCCTGTAATGGAAGGTAAGGCATTGCTGTTCAAGCATTTTGCCAATATCGATGCCACCGA TATTCAGGTGAAGCATCGCACGACAGAAGAGTTTATCAATACCGTTGAAGCCATTGCCGACACCTTCGGTGGCATCAATC TGGAAGACATCAAGGCACCCGAGTGTTTCGAGATTGAGCGTGAGCTGATTGAGCGCTGCGCCATTCCGGTATTCCACGAT GATCAGCACGGTACCGCCATAGTCACTGCTGCAGGTATGATTAATGCGCTGGAAATTCAGGGTAAATCCATCGATAAAGC CGTGTTCGTGTGTATGGGGGCCGGCGCCGCCGCCATCGCCTGTATGACCATGCTGGTCAAATGTGGTGCCCAGCGTGAAA ATGTGTACATGCTGGATCGCAAAGGTGTCATCCACACCCGCCGTGATGACCTGAATGAATACAAGGCTCTGTTTGCCAAC AACACCGACAAGCGCACTCTGCAGGATGTGATCAAGGGCGCCGATGTGTTCCTGGGTCTGTCCGGTCCGGATGTACTGGG TGCCGACGATGTGCTCTTGATGGCCGATAATCCGGTGATCTTTGCCTGTTCCAACCCGGATCCTGAGATCAAGCCTGAAC TCGCCCACGATATCCGTAAAGACATCATCATGGGTACCGGCCGCAGCGATTACCCCAACCAGGTAAACAATGTGCTGTGC TTCCCCTTCATCTTCCGCGGTGCGCTGGATGTTCGCGCTTCACGCATCAACGATGAGATGAAGATTGCCGCCGTGCATGC CCTGGCCGATTTGGCGAAAGAGCCTGTCCCTGCCTCTGTGCTGGCTGCCTATCCCAATGTCAGCAGCCTGAGTTTTGGCC CTGAGTATGTGCTGCCAAAGCCCATGGATCCACGTTTGCTGCCAAGGGTTGCCCGTGCTGTTGCCCAGGCTGCCATCGAT TCCGGTGTTGCTGCCATCGACCCTCTGCCAGAGAACTACCTCGCCTGA
Upstream 100 bases:
>100_bases CGCGTAATCTTTATGGCCTTAGTAAAGGGGCCCGAATTTGCTGTTGCGATGCCCTTTTGCCCGCGGATTTACCCATAAAA ACGTCGTTCAGGATTAAAAA
Downstream 100 bases:
>100_bases TCTAAATCCCTTAGTGGTAAAGACAGACAAAAGGCAACCCTTGTGGTTGCCTTTTGTTATTGAGTACCTGATAATTTTTA ACAATTTGCAGTGTCCCGCC
Product: malate dehydrogenase
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MADLRQQALDYHEFPVPGKMAVCLTKPAETSMDLALAYSPGVAEPVREIASNPADAYRYTAKGNTVAVISNGTAILGLGN LGPLASKPVMEGKALLFKHFANIDATDIQVKHRTTEEFINTVEAIADTFGGINLEDIKAPECFEIERELIERCAIPVFHD DQHGTAIVTAAGMINALEIQGKSIDKAVFVCMGAGAAAIACMTMLVKCGAQRENVYMLDRKGVIHTRRDDLNEYKALFAN NTDKRTLQDVIKGADVFLGLSGPDVLGADDVLLMADNPVIFACSNPDPEIKPELAHDIRKDIIMGTGRSDYPNQVNNVLC FPFIFRGALDVRASRINDEMKIAAVHALADLAKEPVPASVLAAYPNVSSLSFGPEYVLPKPMDPRLLPRVARAVAQAAID SGVAAIDPLPENYLA
Sequences:
>Translated_415_residues MADLRQQALDYHEFPVPGKMAVCLTKPAETSMDLALAYSPGVAEPVREIASNPADAYRYTAKGNTVAVISNGTAILGLGN LGPLASKPVMEGKALLFKHFANIDATDIQVKHRTTEEFINTVEAIADTFGGINLEDIKAPECFEIERELIERCAIPVFHD DQHGTAIVTAAGMINALEIQGKSIDKAVFVCMGAGAAAIACMTMLVKCGAQRENVYMLDRKGVIHTRRDDLNEYKALFAN NTDKRTLQDVIKGADVFLGLSGPDVLGADDVLLMADNPVIFACSNPDPEIKPELAHDIRKDIIMGTGRSDYPNQVNNVLC FPFIFRGALDVRASRINDEMKIAAVHALADLAKEPVPASVLAAYPNVSSLSFGPEYVLPKPMDPRLLPRVARAVAQAAID SGVAAIDPLPENYLA >Mature_414_residues ADLRQQALDYHEFPVPGKMAVCLTKPAETSMDLALAYSPGVAEPVREIASNPADAYRYTAKGNTVAVISNGTAILGLGNL GPLASKPVMEGKALLFKHFANIDATDIQVKHRTTEEFINTVEAIADTFGGINLEDIKAPECFEIERELIERCAIPVFHDD QHGTAIVTAAGMINALEIQGKSIDKAVFVCMGAGAAAIACMTMLVKCGAQRENVYMLDRKGVIHTRRDDLNEYKALFANN TDKRTLQDVIKGADVFLGLSGPDVLGADDVLLMADNPVIFACSNPDPEIKPELAHDIRKDIIMGTGRSDYPNQVNNVLCF PFIFRGALDVRASRINDEMKIAAVHALADLAKEPVPASVLAAYPNVSSLSFGPEYVLPKPMDPRLLPRVARAVAQAAIDS GVAAIDPLPENYLA
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=353, Percent_Identity=26.628895184136, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI62420880, Length=353, Percent_Identity=26.628895184136, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI239049447, Length=353, Percent_Identity=26.628895184136, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI4505143, Length=344, Percent_Identity=24.7093023255814, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI1788806, Length=404, Percent_Identity=60.6435643564356, Blast_Score=475, Evalue=1e-135, Organism=Escherichia coli, GI87081919, Length=295, Percent_Identity=26.1016949152542, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17537199, Length=366, Percent_Identity=26.2295081967213, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21356279, Length=411, Percent_Identity=27.7372262773723, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI281362674, Length=411, Percent_Identity=27.7372262773723, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI281362672, Length=411, Percent_Identity=27.7372262773723, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI78707242, Length=402, Percent_Identity=25.6218905472637, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI78707238, Length=402, Percent_Identity=25.6218905472637, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI78707240, Length=341, Percent_Identity=26.6862170087977, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI24646388, Length=410, Percent_Identity=27.5609756097561, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI24646386, Length=410, Percent_Identity=27.5609756097561, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI281363503, Length=352, Percent_Identity=24.4318181818182, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI281363505, Length=352, Percent_Identity=24.4318181818182, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI78707236, Length=352, Percent_Identity=24.4318181818182, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI78707232, Length=352, Percent_Identity=24.4318181818182, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 44699; Mature: 44568
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLRQQALDYHEFPVPGKMAVCLTKPAETSMDLALAYSPGVAEPVREIASNPADAYRYT CCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCCHHEEEE AKGNTVAVISNGTAILGLGNLGPLASKPVMEGKALLFKHFANIDATDIQVKHRTTEEFIN ECCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH TVEAIADTFGGINLEDIKAPECFEIERELIERCAIPVFHDDQHGTAIVTAAGMINALEIQ HHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCEEEEECCCEEEEEEC GKSIDKAVFVCMGAGAAAIACMTMLVKCGAQRENVYMLDRKGVIHTRRDDLNEYKALFAN CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCHHHHHHHHHHHCC NTDKRTLQDVIKGADVFLGLSGPDVLGADDVLLMADNPVIFACSNPDPEIKPELAHDIRK CCCHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHH DIIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASRINDEMKIAAVHALADLAKEPVPASV HHEECCCCCCCCHHHHCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH LAAYPNVSSLSFGPEYVLPKPMDPRLLPRVARAVAQAAIDSGVAAIDPLPENYLA HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCHHCCC >Mature Secondary Structure ADLRQQALDYHEFPVPGKMAVCLTKPAETSMDLALAYSPGVAEPVREIASNPADAYRYT CCHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCCHHEEEE AKGNTVAVISNGTAILGLGNLGPLASKPVMEGKALLFKHFANIDATDIQVKHRTTEEFIN ECCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH TVEAIADTFGGINLEDIKAPECFEIERELIERCAIPVFHDDQHGTAIVTAAGMINALEIQ HHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCEEEEECCCEEEEEEC GKSIDKAVFVCMGAGAAAIACMTMLVKCGAQRENVYMLDRKGVIHTRRDDLNEYKALFAN CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCHHHHHHHHHHHCC NTDKRTLQDVIKGADVFLGLSGPDVLGADDVLLMADNPVIFACSNPDPEIKPELAHDIRK CCCHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHH DIIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASRINDEMKIAAVHALADLAKEPVPASV HHEECCCCCCCCHHHHCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH LAAYPNVSSLSFGPEYVLPKPMDPRLLPRVARAVAQAAIDSGVAAIDPLPENYLA HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]