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The map label for this gene is cph2 [H]

Identifier: 119773572

GI number: 119773572

Start: 531879

End: 532790

Strand: Direct

Name: cph2 [H]

Synonym: Sama_0432

Alternate gene names: 119773572

Gene position: 531879-532790 (Clockwise)

Preceding gene: 119773571

Following gene: 119773573

Centisome position: 12.35

GC content: 56.47

Gene sequence:

>912_bases
ATGTACCCCGTCCATGAAAATTATTGTGAATTTGCCGCCGTTGCCGAGGTTGTTCAGTGCCTTCAGCAACCCATGGCGTT
GGCCGATGCCTCCGGTAAGGTGCTCTGCGTGAATCAAGCCGCAGCAGCATTACTGGGGGACGAAGCAGAGACCTTTATTG
GGGAGCTGTGGCCAAGTTGGCTGGAGAGTGGATATCAGGGCCTCTACCGGGAACTGCAATCTGCAGCCGATGGGCAATAT
CATGCTCTGCAACACGGTGCCAGGGAAGTGCAGCTTCGGCGGGTGGACGGTGCCCTCTTGTGGGTGAAGCTGAGTCTGTC
GTTTGTGCAGGGGCTGCTGCCGCTGTTTCTGGTGGGTTTTGAGGATTTGTCCTCGCAAAAGGCGGAGGTACAAAGGCTCA
CTGCGCTGGCGGCCACCGATTATTTAACCGGCCTTGCCAATCGACGCACCCTGATGGAGGTGCTGGAAAAACAGTGGCGA
CAGTGTCTGGCCCGTCGTCACCCCATTAGTGTGGTGATTGTTGATGTGGACTTTTTCAAGCAATTCAACGATCTCTATGG
TCATTTAAAGGGGGATGAGTGTCTCAGACAGATTGCTGCGGCCTTGGCTTCTACCCTGCCTTCACCCCAATGCCTGGCTG
CGCGATTCGGCGGCGAAGAATTTGTCCTGCTGCTCCCTGGCTTTAATGCGGCCATGGCGGAATTGATTGCCAGACAGGTG
TCTGAGGCGGTAGCAGCCATAGATATTGCTGCCATGGGCTTGCCACAGGGGGCCCTGCTGACCGTCAGTCAAGGGATTGC
CTGTGAGATAAGTGGCCAGTTTCGCACCGCCGATGCCATGCTGCTGGGGGCCGATACGGCGCTGTACCGGGCCAAGCGCG
AAGGCAGAAACAAGATAATACTGTCGGACTGA

Upstream 100 bases:

>100_bases
TTTTTAATATCAGTATCTTGCGTCGTAAGCTTGCGGGAAGGTTAAAGTTGACGTCGCATTCTAAAGTGGTTGGCATAGGA
CACACCGTCAGGAGCCAGCC

Downstream 100 bases:

>100_bases
GCGGGGAGGGATGCCATGAACTGGCTGGCGATTTCCAAGCTGGGCTGCGGTCGTAAGCGGGCCGAAACTTTCCTTGAGCT
GCAGCGCAAACGCTATGGCC

Product: response regulator receiver protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MYPVHENYCEFAAVAEVVQCLQQPMALADASGKVLCVNQAAAALLGDEAETFIGELWPSWLESGYQGLYRELQSAADGQY
HALQHGAREVQLRRVDGALLWVKLSLSFVQGLLPLFLVGFEDLSSQKAEVQRLTALAATDYLTGLANRRTLMEVLEKQWR
QCLARRHPISVVIVDVDFFKQFNDLYGHLKGDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQV
SEAVAAIDIAAMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKIILSD

Sequences:

>Translated_303_residues
MYPVHENYCEFAAVAEVVQCLQQPMALADASGKVLCVNQAAAALLGDEAETFIGELWPSWLESGYQGLYRELQSAADGQY
HALQHGAREVQLRRVDGALLWVKLSLSFVQGLLPLFLVGFEDLSSQKAEVQRLTALAATDYLTGLANRRTLMEVLEKQWR
QCLARRHPISVVIVDVDFFKQFNDLYGHLKGDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQV
SEAVAAIDIAAMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKIILSD
>Mature_303_residues
MYPVHENYCEFAAVAEVVQCLQQPMALADASGKVLCVNQAAAALLGDEAETFIGELWPSWLESGYQGLYRELQSAADGQY
HALQHGAREVQLRRVDGALLWVKLSLSFVQGLLPLFLVGFEDLSSQKAEVQRLTALAATDYLTGLANRRTLMEVLEKQWR
QCLARRHPISVVIVDVDFFKQFNDLYGHLKGDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQV
SEAVAAIDIAAMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKIILSD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=292, Percent_Identity=34.5890410958904, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1786584, Length=198, Percent_Identity=29.7979797979798, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=35.8823529411765, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=32.9411764705882, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693134, Length=212, Percent_Identity=29.2452830188679, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=35.5555555555556, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787816, Length=229, Percent_Identity=30.5676855895196, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=32.5153374233129, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=186, Percent_Identity=34.4086021505376, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=187, Percent_Identity=30.4812834224599, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=33.5365853658537, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=179, Percent_Identity=29.608938547486, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 33057; Mature: 33057

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPVHENYCEFAAVAEVVQCLQQPMALADASGKVLCVNQAAAALLGDEAETFIGELWPSW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHH
LESGYQGLYRELQSAADGQYHALQHGAREVQLRRVDGALLWVKLSLSFVQGLLPLFLVGF
HHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHEECCCEEEHHHHHHHHHHHHHHHHHHHH
EDLSSQKAEVQRLTALAATDYLTGLANRRTLMEVLEKQWRQCLARRHPISVVIVDVDFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
QFNDLYGHLKGDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQV
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
SEAVAAIDIAAMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKII
HHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCEEECCEEEEECHHHHHHHHHCCCCEEE
LSD
ECC
>Mature Secondary Structure
MYPVHENYCEFAAVAEVVQCLQQPMALADASGKVLCVNQAAAALLGDEAETFIGELWPSW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHH
LESGYQGLYRELQSAADGQYHALQHGAREVQLRRVDGALLWVKLSLSFVQGLLPLFLVGF
HHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHEECCCEEEHHHHHHHHHHHHHHHHHHHH
EDLSSQKAEVQRLTALAATDYLTGLANRRTLMEVLEKQWRQCLARRHPISVVIVDVDFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
QFNDLYGHLKGDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQV
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
SEAVAAIDIAAMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKII
HHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCEEECCEEEEECHHHHHHHHHCCCCEEE
LSD
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]