Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773532
Identifier: 119773532
GI number: 119773532
Start: 484927
End: 485916
Strand: Direct
Name: 119773532
Synonym: Sama_0391
Alternate gene names: NA
Gene position: 484927-485916 (Clockwise)
Preceding gene: 119773530
Following gene: 119773536
Centisome position: 11.26
GC content: 43.33
Gene sequence:
>990_bases ATGGCTAAGTTTAATATCGGACGTTTATCACTTATTATGCTATTTTATGGGGTGTCAAGTAATGTTTTTTCTGCTCCTGT AGAGTACATTGCTAATGGCGACTTTGAAACCGGAGATTTCTCTGGTTGGAATATTACGGACTCTGGCTCCGGGGCTTGGG TTATCAATGATGGCACATTTGACCCAACAGGACCTGGGGAACCGCTACCACCCATTTCAGGCACCTATGATATTGTGAGT CATCAAGGGGGACCTGGCTTGCACATAGCAACTCAACCCATATCCCTGCCGACTGCGATCAAATCTGCAACCCTCAGCTG GGCCGACCGAATTCGCAGTTATGCTGAGTTCAGCGATCCAAATCAGGAATGGCGTGTATTGGTTGAGGATACCAACGGCA ATCTGCTGCAAGAAGTTTTTTCTACCAATCCCGGTGACCCAACCCAACAAATAGGGCCAAATAACCGAAGCTTTGATTTA ACTGCCCTACTGCAAACCTATCAAGGACAGCAGGTGGTTATCAGTTTTGAAGAGCAGGATGATCAGTTATATTTTAATGC AACATTGGATGATGTCAGTCTTGAAATTACCCAACTAACTCTGTCGTGTGTGGGTGGTGGGTTTGAACCTCCATTCTCTG ACCCCATAGTGATATTTGGCAAAAAGAATATGGCGATTCCGGTTAAATTTAAGCTAATCGATGCTGACGGTGTTGAATAT ACTTTTGACGATATAGCACCACCTGTCGTGAATATCTCTTATTCACCATTGGTTGCCGGACCTACTATAGATGTTACCGA CGATTTGTTGCCATTAGGTAATGCCAATGACGATAATATTTTTCGTTGGGATGTGGATGGTCAGAAATGGATTTATAATT TAGGCACCAAACCCTATAAGTCTCTAGGCACTTATACTGTATCAGTAGCACCGGGTTCCTCTGATTACACTGTTGATTCA AGTTGTGAACAGATTTTTGAAAGACAATAG
Upstream 100 bases:
>100_bases TGAATGTAAATATTAAATTAGTGACTAATATTATTCGGCCAATGTTGTCATGGCATTATTTTAGTGTGTTTTTTCAGCTT TTAATGTGGAGAGTATGGAA
Downstream 100 bases:
>100_bases TGTGAATTAAGCAATAAACAAGCGCCTGAAAGAGCGCTTGTTTATTCTAATGGGCTATAATGTTTTTCATATAGTTGCAG AATTAATCATACATCAATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MAKFNIGRLSLIMLFYGVSSNVFSAPVEYIANGDFETGDFSGWNITDSGSGAWVINDGTFDPTGPGEPLPPISGTYDIVS HQGGPGLHIATQPISLPTAIKSATLSWADRIRSYAEFSDPNQEWRVLVEDTNGNLLQEVFSTNPGDPTQQIGPNNRSFDL TALLQTYQGQQVVISFEEQDDQLYFNATLDDVSLEITQLTLSCVGGGFEPPFSDPIVIFGKKNMAIPVKFKLIDADGVEY TFDDIAPPVVNISYSPLVAGPTIDVTDDLLPLGNANDDNIFRWDVDGQKWIYNLGTKPYKSLGTYTVSVAPGSSDYTVDS SCEQIFERQ
Sequences:
>Translated_329_residues MAKFNIGRLSLIMLFYGVSSNVFSAPVEYIANGDFETGDFSGWNITDSGSGAWVINDGTFDPTGPGEPLPPISGTYDIVS HQGGPGLHIATQPISLPTAIKSATLSWADRIRSYAEFSDPNQEWRVLVEDTNGNLLQEVFSTNPGDPTQQIGPNNRSFDL TALLQTYQGQQVVISFEEQDDQLYFNATLDDVSLEITQLTLSCVGGGFEPPFSDPIVIFGKKNMAIPVKFKLIDADGVEY TFDDIAPPVVNISYSPLVAGPTIDVTDDLLPLGNANDDNIFRWDVDGQKWIYNLGTKPYKSLGTYTVSVAPGSSDYTVDS SCEQIFERQ >Mature_328_residues AKFNIGRLSLIMLFYGVSSNVFSAPVEYIANGDFETGDFSGWNITDSGSGAWVINDGTFDPTGPGEPLPPISGTYDIVSH QGGPGLHIATQPISLPTAIKSATLSWADRIRSYAEFSDPNQEWRVLVEDTNGNLLQEVFSTNPGDPTQQIGPNNRSFDLT ALLQTYQGQQVVISFEEQDDQLYFNATLDDVSLEITQLTLSCVGGGFEPPFSDPIVIFGKKNMAIPVKFKLIDADGVEYT FDDIAPPVVNISYSPLVAGPTIDVTDDLLPLGNANDDNIFRWDVDGQKWIYNLGTKPYKSLGTYTVSVAPGSSDYTVDSS CEQIFERQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35895; Mature: 35764
Theoretical pI: Translated: 3.84; Mature: 3.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKFNIGRLSLIMLFYGVSSNVFSAPVEYIANGDFETGDFSGWNITDSGSGAWVINDGTF CCCCCCHHHEEEEHHHCCCCCHHHCCHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCC DPTGPGEPLPPISGTYDIVSHQGGPGLHIATQPISLPTAIKSATLSWADRIRSYAEFSDP CCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC NQEWRVLVEDTNGNLLQEVFSTNPGDPTQQIGPNNRSFDLTALLQTYQGQQVVISFEEQD CCEEEEEEECCCCHHHHHHHCCCCCCCHHHCCCCCCCEEHHHHHHHCCCCEEEEEEECCC DQLYFNATLDDVSLEITQLTLSCVGGGFEPPFSDPIVIFGKKNMAIPVKFKLIDADGVEY CEEEEEEEECCCEEEEEEEEEEHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEECCCCEE TFDDIAPPVVNISYSPLVAGPTIDVTDDLLPLGNANDDNIFRWDVDGQKWIYNLGTKPYK EHHHCCCCEEEEECCCEEECCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEECCCCCCC SLGTYTVSVAPGSSDYTVDSSCEQIFERQ CCCCEEEEECCCCCCCEECHHHHHHHHCC >Mature Secondary Structure AKFNIGRLSLIMLFYGVSSNVFSAPVEYIANGDFETGDFSGWNITDSGSGAWVINDGTF CCCCCHHHEEEEHHHCCCCCHHHCCHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCC DPTGPGEPLPPISGTYDIVSHQGGPGLHIATQPISLPTAIKSATLSWADRIRSYAEFSDP CCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC NQEWRVLVEDTNGNLLQEVFSTNPGDPTQQIGPNNRSFDLTALLQTYQGQQVVISFEEQD CCEEEEEEECCCCHHHHHHHCCCCCCCHHHCCCCCCCEEHHHHHHHCCCCEEEEEEECCC DQLYFNATLDDVSLEITQLTLSCVGGGFEPPFSDPIVIFGKKNMAIPVKFKLIDADGVEY CEEEEEEEECCCEEEEEEEEEEHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEECCCCEE TFDDIAPPVVNISYSPLVAGPTIDVTDDLLPLGNANDDNIFRWDVDGQKWIYNLGTKPYK EHHHCCCCEEEEECCCEEECCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEECCCCCCC SLGTYTVSVAPGSSDYTVDSSCEQIFERQ CCCCEEEEECCCCCCCEECHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA