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The map label for this gene is ccmH [H]

Identifier: 119773391

GI number: 119773391

Start: 274365

End: 274868

Strand: Direct

Name: ccmH [H]

Synonym: Sama_0250

Alternate gene names: 119773391

Gene position: 274365-274868 (Clockwise)

Preceding gene: 119773390

Following gene: 119773392

Centisome position: 6.37

GC content: 50.0

Gene sequence:

>504_bases
ATGAAACCATTAAACCTGTTGTTGGCAATGGTGCTGTTCTGTATCAGCACCCTGACATTCGCAACGCCGGTGGACACCTA
TGAATTTAAGTCTGCCGACAATCAAAAGCGTGCTTTGTCGCTTGCACATGAATTGCGCTGTCCACAGTGTCAAAACCAAA
ACCTCATCGACTCCAACTCACCGGTTGCCCGCGACCTGCGTCTGGAAGTTTACAAGATGGTGGACGAAGGCAAGTCAGAC
GATCAGATTATCGAGTTTATGACCACCCGCTATGGTGACTTCGTGCTCTATAAGCCAAGGGTCGAAGGGCGGACTTATAT
CCTGTGGCTCGGACCAGTAGCACTGCTGTTGATTGGCTTGATGGTGGTAATACTATTCATCCGTAAACAACGCAGTCAAA
CAGCCGATGCTGCCGATTTGACCCCTGAGCAGCAGGCAGAACTCGATGCCTTGCTGAAAGGTAGCCAGCCCGAAGCCGAT
AACGGCAAGGGTAAAAAATCATGA

Upstream 100 bases:

>100_bases
TGTGGAGTGAGACTCTTTACCCCATGGTTCAGCAGTTGCAGCAGGAGGCCGCTGCGGAAGCGGCCGCTTCCGGTAAAGCC
ACTGCGACAGGAGCCGCCTC

Downstream 100 bases:

>100_bases
AGCGCATAGTCTGCGCACTGATGTTGGCGGCCTCCGGGGCCGCCATTGCTTATCCGGGGATGCAACAGCAAATGGTGCAG
CCAGCATCCAGTGTGGATCT

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKPLNLLLAMVLFCISTLTFATPVDTYEFKSADNQKRALSLAHELRCPQCQNQNLIDSNSPVARDLRLEVYKMVDEGKSD
DQIIEFMTTRYGDFVLYKPRVEGRTYILWLGPVALLLIGLMVVILFIRKQRSQTADAADLTPEQQAELDALLKGSQPEAD
NGKGKKS

Sequences:

>Translated_167_residues
MKPLNLLLAMVLFCISTLTFATPVDTYEFKSADNQKRALSLAHELRCPQCQNQNLIDSNSPVARDLRLEVYKMVDEGKSD
DQIIEFMTTRYGDFVLYKPRVEGRTYILWLGPVALLLIGLMVVILFIRKQRSQTADAADLTPEQQAELDALLKGSQPEAD
NGKGKKS
>Mature_167_residues
MKPLNLLLAMVLFCISTLTFATPVDTYEFKSADNQKRALSLAHELRCPQCQNQNLIDSNSPVARDLRLEVYKMVDEGKSD
DQIIEFMTTRYGDFVLYKPRVEGRTYILWLGPVALLLIGLMVVILFIRKQRSQTADAADLTPEQQAELDALLKGSQPEAD
NGKGKKS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=120, Percent_Identity=40.8333333333333, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1790512, Length=91, Percent_Identity=51.6483516483517, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18794; Mature: 18794

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLNLLLAMVLFCISTLTFATPVDTYEFKSADNQKRALSLAHELRCPQCQNQNLIDSNS
CCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
PVARDLRLEVYKMVDEGKSDDQIIEFMTTRYGDFVLYKPRVEGRTYILWLGPVALLLIGL
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHHHHHHHHH
MVVILFIRKQRSQTADAADLTPEQQAELDALLKGSQPEADNGKGKKS
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPLNLLLAMVLFCISTLTFATPVDTYEFKSADNQKRALSLAHELRCPQCQNQNLIDSNS
CCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
PVARDLRLEVYKMVDEGKSDDQIIEFMTTRYGDFVLYKPRVEGRTYILWLGPVALLLIGL
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHHHHHHHHH
MVVILFIRKQRSQTADAADLTPEQQAELDALLKGSQPEADNGKGKKS
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA