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The map label for this gene is xerC [H]

Identifier: 119717469

GI number: 119717469

Start: 3446958

End: 3447896

Strand: Reverse

Name: xerC [H]

Synonym: Noca_3245

Alternate gene names: 119717469

Gene position: 3447896-3446958 (Counterclockwise)

Preceding gene: 119717470

Following gene: 119717467

Centisome position: 69.15

GC content: 75.29

Gene sequence:

>939_bases
GTGAGCGAGGAGGAGCAGTCGGCGCGGCTTCCCGAGGCGATGGCCCGGGCGCTCGGCGACTACGAGCGTCACCTCGCCGC
CGAGCGGGACCTGTCCGAGCACACGGTGCGTGCGTACATCGGGGATGTGGCCGGGCTCCTGGAGCATGCCAGCCGGCTCG
GCCAGACCGAGCCCGGCGACCTCGACCTGCGGACCCTGCGGAGCTGGCTGGCCAAGCAGCAGACCATGGGCCGCTCCCGG
ACCACCCTCGCCCGTCGGGCTACCGCAGCGCGGGTGTTCACCGCCTGGCTGGCTCGCACCGGCCGCACTCCGCTGGACGC
CGGCGCGAGCCTCGGTGCGCCCAAGGCGCACCGGACGCTGCCACCGGTGCTGCGCACCGACGAAGCGGCCGACCTGGTCC
GCGCGGCGGTCGAGCACGCCGACGACGGCAGCCCGGTCGGTCTGCGCGACGTGGCGATGCTCGAGCTGCTCTACGCGACC
GGCATCCGGGTGGGAGAGCTCGTCGGCCTCGACATCGACGACCTGGACCGCGAGCGCAACGTGGTCCGGGTGCTCGGCAA
GGGCCGCAAGGAGCGGACCGTTCCGTTCGGGCGGCCCGCCGCCCGCGCCGTGGACTTCTGGCTCAAGCACGGCCGGCCGC
TGCTCGCGGTCGAGGGGAGCGGCGCCGCGCTGTTCCTCGGCGCCCGCGGCCGCCGCATCGACCAGCGCGCGGTCCGCACG
GTCGTGCACCGGCGCATCGCGGAGGTGCCGGGCGCGCCCGACATCGGCCCGCACGGGTTGCGGCACACCGCCGCCACGCA
CCTGCTCGAGGGCGGCGCCGACCTGCGCTCGGTGCAGGAGCTGCTCGGCCACGCCTCGCTTGCGACCACCCAGATCTACA
CCCACGTCAGCACCGAGCGGCTGCGGCGGGCCTACCAGCAGGCACACCCCAGAGCCTGA

Upstream 100 bases:

>100_bases
GCGCTCGCCGAGCGCGGCCTCGCCGAGCAGGTCCCGGGCGGTTGGCGGCTCGCCGCACTGGCTCACCAGTAGCGCCCGGC
CTCCTTCCTAGACTCGGGGC

Downstream 100 bases:

>100_bases
GGACGGGCCCATAGCGCCATCGGCGCGACCCAGCCGGCGTACACCAGCGACGGCGGACGCCACGGCGACGCGACGGCGCC
GCGGCCGACCGGCTCGTCGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSEEEQSARLPEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRTLRSWLAKQQTMGRSR
TTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTLPPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYAT
GIRVGELVGLDIDDLDRERNVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRT
VVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHPRA

Sequences:

>Translated_312_residues
MSEEEQSARLPEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRTLRSWLAKQQTMGRSR
TTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTLPPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYAT
GIRVGELVGLDIDDLDRERNVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRT
VVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHPRA
>Mature_311_residues
SEEEQSARLPEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRTLRSWLAKQQTMGRSRT
TLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTLPPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYATG
IRVGELVGLDIDDLDRERNVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRTV
VHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=40.2027027027027, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1789261, Length=305, Percent_Identity=40.9836065573771, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34080; Mature: 33949

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEEQSARLPEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGD
CCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LDLRTLRSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYATGIRVGELVGLDIDDLDRERN
CCHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHEECCCHHHHHHHHH
VVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRT
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCHHHHHHHHH
VVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTER
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRAYQQAHPRA
HHHHHHHHCCCC
>Mature Secondary Structure 
SEEEQSARLPEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGD
CCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LDLRTLRSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYATGIRVGELVGLDIDDLDRERN
CCHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHEECCCHHHHHHHHH
VVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRT
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCHHHHHHHHH
VVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTER
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRAYQQAHPRA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA