Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717415
Identifier: 119717415
GI number: 119717415
Start: 3391439
End: 3391804
Strand: Reverse
Name: 119717415
Synonym: Noca_3191
Alternate gene names: NA
Gene position: 3391804-3391439 (Counterclockwise)
Preceding gene: 119717416
Following gene: 119717414
Centisome position: 68.03
GC content: 71.58
Gene sequence:
>366_bases GTGGCGCGTGAACACATCCCTTCTGCATGCCCCGAACCCTCCAGCCTGCCAGGCCCGGTCCGGACGTGTGTCGGGTGCCG GAAGCGGGCCGCGAAGAACGAGCTGGTCCGCGTGACCGTCGGCTCGGATGCGCACGGCCACCCGGCCGTCGTACCCGATC CGGCAGCCACCGCACCCGGGCGGGGAGCGCACCTGCACCCCACCATGGAGTGTTACGACCTCGCGGTGCGCCGGAAGGCG TTCGGCCGGGCCCTCCGGGTCACGACCGGGCTCTCCAGTGCACCGGTGGGGGAGTACCTCGGCTCGGCAGACGGCACGGC ACCACACCCCCGATCGACCGACAGAGACTGGAGCAGCAGCTCATGA
Upstream 100 bases:
>100_bases GAGGCCGAAGCCGGCAGCGACGCCTGAGGAGCGGCGGGATCGCGGCACCACGGGTCCCCGGTTCGATAAGGGTGGCCCGA TCGCGGTAGGGTTGTCGCCA
Downstream 100 bases:
>100_bases GCACTCGATGAGTACTTCGCGATGAGTTTGCACAACCACTAACGGTCTGAATCACCCCCCAGCACAGAACTGGACCCGGG TCTCAGGCCAGAAGGAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MAREHIPSACPEPSSLPGPVRTCVGCRKRAAKNELVRVTVGSDAHGHPAVVPDPAATAPGRGAHLHPTMECYDLAVRRKA FGRALRVTTGLSSAPVGEYLGSADGTAPHPRSTDRDWSSSS
Sequences:
>Translated_121_residues MAREHIPSACPEPSSLPGPVRTCVGCRKRAAKNELVRVTVGSDAHGHPAVVPDPAATAPGRGAHLHPTMECYDLAVRRKA FGRALRVTTGLSSAPVGEYLGSADGTAPHPRSTDRDWSSSS >Mature_120_residues AREHIPSACPEPSSLPGPVRTCVGCRKRAAKNELVRVTVGSDAHGHPAVVPDPAATAPGRGAHLHPTMECYDLAVRRKAF GRALRVTTGLSSAPVGEYLGSADGTAPHPRSTDRDWSSSS
Specific function: Unknown
COG id: COG2740
COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12662; Mature: 12531
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAREHIPSACPEPSSLPGPVRTCVGCRKRAAKNELVRVTVGSDAHGHPAVVPDPAATAPG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC RGAHLHPTMECYDLAVRRKAFGRALRVTTGLSSAPVGEYLGSADGTAPHPRSTDRDWSSS CCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC S C >Mature Secondary Structure AREHIPSACPEPSSLPGPVRTCVGCRKRAAKNELVRVTVGSDAHGHPAVVPDPAATAPG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC RGAHLHPTMECYDLAVRRKAFGRALRVTTGLSSAPVGEYLGSADGTAPHPRSTDRDWSSS CCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC S C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA