Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717294
Identifier: 119717294
GI number: 119717294
Start: 3270093
End: 3270722
Strand: Reverse
Name: 119717294
Synonym: Noca_3070
Alternate gene names: NA
Gene position: 3270722-3270093 (Counterclockwise)
Preceding gene: 119717295
Following gene: 119717293
Centisome position: 65.6
GC content: 73.81
Gene sequence:
>630_bases ATGAGCAGTCCGATGCCCCAGGCCCGCTCGCGGATGCCGCGGATCGCCGAGCGTGCCGTCGAGCGGGCCCGGCTCACCGT CGTCCCACGCACCCGTGCGCAGGCCGCGCGGATGCCGTTCGTCGCGCTGGTCACCCTGGTGTTGCTCGGCGGCGTCGTCG GCCTGCTGCTGTTCAACACCTCGATGCAGCAGTCCTCGTTCGCGGCGACCGCGCTCGAGGGCCAGGCCACCACCCTCGCG GCACGGCAGCAGGGCCTCCAGATGGACCTCGACCGGCTCCGCGACCCCCAGCGGATCGCGGCCGCCGCCCAGAAGCTCGG CATGGTGCAGGCGTGCGGCCCGGCCTTCGTCCGGCTGGGCTCCGGCGCGGTGTCCGGCCGGCCCTGCGCCGCCGACGGCA GCGTGCCGTTCCGGATCACGCCGCCGCCGCCGGCCAAGCCCGCGGTGCTCGACCCGGCACCGAACGTCGTGCACGTGACC GCCCCCGCGGCCGGCGCCGGGGAATCCGGCGACACGGCTGGCGGTGCCGCCGGGAACGGCGACGGACAGGGTAGGAAGAA CCACAAGAACCAGCAGTCCCATCAGCAACAGCAGCAACAACAGCAACAACAGCAGCAGACCCGCCGCTGA
Upstream 100 bases:
>100_bases GGGGCGCCGAGAAGGCGGGCCCCGAGGAGATCGCCCTGAACCCGCGCGCCGCCTCGGTCCGGCTGCGCGCGATCGAGCGC ACGAGCAAGGGAGCAGCAGC
Downstream 100 bases:
>100_bases CCTCCCGCCGACCCAGCCGCCCCCCGACCTCCGGAGACCCCGTTGCGCCAGCCCCGTGCACCCCGCGGCTCCCGCCGCGG CTCTCCGCAGCTGCGGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MSSPMPQARSRMPRIAERAVERARLTVVPRTRAQAARMPFVALVTLVLLGGVVGLLLFNTSMQQSSFAATALEGQATTLA ARQQGLQMDLDRLRDPQRIAAAAQKLGMVQACGPAFVRLGSGAVSGRPCAADGSVPFRITPPPPAKPAVLDPAPNVVHVT APAAGAGESGDTAGGAAGNGDGQGRKNHKNQQSHQQQQQQQQQQQQTRR
Sequences:
>Translated_209_residues MSSPMPQARSRMPRIAERAVERARLTVVPRTRAQAARMPFVALVTLVLLGGVVGLLLFNTSMQQSSFAATALEGQATTLA ARQQGLQMDLDRLRDPQRIAAAAQKLGMVQACGPAFVRLGSGAVSGRPCAADGSVPFRITPPPPAKPAVLDPAPNVVHVT APAAGAGESGDTAGGAAGNGDGQGRKNHKNQQSHQQQQQQQQQQQQTRR >Mature_208_residues SSPMPQARSRMPRIAERAVERARLTVVPRTRAQAARMPFVALVTLVLLGGVVGLLLFNTSMQQSSFAATALEGQATTLAA RQQGLQMDLDRLRDPQRIAAAAQKLGMVQACGPAFVRLGSGAVSGRPCAADGSVPFRITPPPPAKPAVLDPAPNVVHVTA PAAGAGESGDTAGGAAGNGDGQGRKNHKNQQSHQQQQQQQQQQQQTRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21938; Mature: 21807
Theoretical pI: Translated: 12.08; Mature: 12.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPMPQARSRMPRIAERAVERARLTVVPRTRAQAARMPFVALVTLVLLGGVVGLLLFNT CCCCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC SMQQSSFAATALEGQATTLAARQQGLQMDLDRLRDPQRIAAAAQKLGMVQACGPAFVRLG CHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHCCHHHCCHHHHHHC SGAVSGRPCAADGSVPFRITPPPPAKPAVLDPAPNVVHVTAPAAGAGESGDTAGGAAGNG CCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC DGQGRKNHKNQQSHQQQQQQQQQQQQTRR CCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSPMPQARSRMPRIAERAVERARLTVVPRTRAQAARMPFVALVTLVLLGGVVGLLLFNT CCCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC SMQQSSFAATALEGQATTLAARQQGLQMDLDRLRDPQRIAAAAQKLGMVQACGPAFVRLG CHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHCCHHHCCHHHHHHC SGAVSGRPCAADGSVPFRITPPPPAKPAVLDPAPNVVHVTAPAAGAGESGDTAGGAAGNG CCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC DGQGRKNHKNQQSHQQQQQQQQQQQQTRR CCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA