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The map label for this gene is yggS [C]

Identifier: 119717282

GI number: 119717282

Start: 3255406

End: 3256110

Strand: Reverse

Name: yggS [C]

Synonym: Noca_3058

Alternate gene names: 119717282

Gene position: 3256110-3255406 (Counterclockwise)

Preceding gene: 119717283

Following gene: 119717281

Centisome position: 65.31

GC content: 75.6

Gene sequence:

>705_bases
ATGAGCAACGAGCGCCGCGACCAGCTCGCCGCCAACCTCGAGACCGTCCGCGACCGGATCGCCGCGGCCTGCGCCGACGC
GGGTCGCGACCCCGCCGACGTCCGGCTCGTGGTCGTCACCAAGTTCTTCCCCGCCTCCGACGTGCGGCTGCTCGCCGAGC
TGGGTGTCACCGACGTCGGCGAGAACCGCCACCAGGAGGCCGAGTCGAAGGCCGCCGAGTGCGCCGACCTCGGCCTGCGT
TGGCACTTCATCGGCGGCCTGCAGAGCAACAAGGCCGCCGCAGTCGCCGAGTACGCCGACGTCGTCGAGTCGGTGGACCG
GCTCAAGCTCGTCGGCCCGCTCGGCCGCGGCGCGCAACGGCGCGACGTGCCGGTCGAGGTGCTGCTCCAGGTCAGCCTCG
ACCCCCCCGGCGCCGAGGGCCGCTCCGGCGCGGACCCGGCCGACCTGCCCGCGCTGGCGGGCGCGGTCGAGCAGGCCGCG
GGGCTGCGGCTGCGAGGCCTGATGGCCGTCGCGCCCCTCGGGGAGGACCCGGCCGCGGCGTTCGCCCGACTGGCCGACCT
CCGCCGCGACTTCCTGCTCGAGCGGCCCGACGCGACCTGGCTCTCGGCCGGCATGAGCGCGGACCTCGAGGACGCCGTGC
GCGTCGGCGCGACACACGTGCGGATCGGCTCCGCGGTCCTCGGATCGAGACCGCGGTTCAAGTAG

Upstream 100 bases:

>100_bases
TCGAGGTGGGCGGCTGCACCCGCGAGCTCCCCGCCCTGCACTCCCACCGCCGCGACGGGGCAGCCGCGGGCCGGCTGGCC
GGCGTGGTCTGGAGGGCGGC

Downstream 100 bases:

>100_bases
TGTCCACAACACCAAGAATGCGTCCCGCCGGGGCGCGGAGTTCCGGAGGCGAACAGTCATGAGCGGCGCGATGCGCAGGA
TCGGCGAGTACCTCGGCCTG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSNERRDQLAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVGENRHQEAESKAAECADLGLR
WHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQRRDVPVEVLLQVSLDPPGAEGRSGADPADLPALAGAVEQAA
GLRLRGLMAVAPLGEDPAAAFARLADLRRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRPRFK

Sequences:

>Translated_234_residues
MSNERRDQLAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVGENRHQEAESKAAECADLGLR
WHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQRRDVPVEVLLQVSLDPPGAEGRSGADPADLPALAGAVEQAA
GLRLRGLMAVAPLGEDPAAAFARLADLRRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRPRFK
>Mature_233_residues
SNERRDQLAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVGENRHQEAESKAAECADLGLRW
HFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQRRDVPVEVLLQVSLDPPGAEGRSGADPADLPALAGAVEQAAG
LRLRGLMAVAPLGEDPAAAFARLADLRRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRPRFK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=235, Percent_Identity=36.1702127659575, Blast_Score=105, Evalue=4e-23,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=37.1794871794872, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=237, Percent_Identity=30.379746835443, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=241, Percent_Identity=31.5352697095436, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=33.953488372093, Blast_Score=103, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24773; Mature: 24642

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNERRDQLAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCC
ENRHQEAESKAAECADLGLRWHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQR
CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RDVPVEVLLQVSLDPPGAEGRSGADPADLPALAGAVEQAAGLRLRGLMAVAPLGEDPAAA
CCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEEECCCCCCHHHH
FARLADLRRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRPRFK
HHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHCCHHEEECHHHHCCCCCCC
>Mature Secondary Structure 
SNERRDQLAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCC
ENRHQEAESKAAECADLGLRWHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQR
CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RDVPVEVLLQVSLDPPGAEGRSGADPADLPALAGAVEQAAGLRLRGLMAVAPLGEDPAAA
CCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEEECCCCCCHHHH
FARLADLRRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRPRFK
HHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHCCHHEEECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]