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The map label for this gene is 119717248

Identifier: 119717248

GI number: 119717248

Start: 3225240

End: 3225872

Strand: Reverse

Name: 119717248

Synonym: Noca_3024

Alternate gene names: NA

Gene position: 3225872-3225240 (Counterclockwise)

Preceding gene: 119717249

Following gene: 119717247

Centisome position: 64.7

GC content: 71.25

Gene sequence:

>633_bases
GTGTCCGGCGTGCGTAGGCGGCTCGCGGGGATCGGCGCCCTGGTGCTGGCCGGGGCGCTGCTCGCCGGCTGCTCCACCAG
CACGGCCGAGACCGACGGCGGCTACCGCGCCGCCGTGACCCACGACCCCTACACGGTCTCGGCGACACCGCTCACCGACA
CCAGCGGGCAGCCGTACTCCCTGACGAAGGACACCGACAAGCCGGTGACGCTGGTGTTCTTCGGCTACTCGAGCTGCCCG
GACATCTGCCAGGTCGTGATGGCCAACATCGCCTCCGCACTCACGCGGCTCGACGAGGCCGACCGCAGCTCCGTCGACGT
GGTGTTCGTGACGACGGACCCGAAGGTCGACACCGAGCAGCACCTGCGCGCGTACCTCGACCGGTTCGACCCGTCCTTCA
TCGGGCTGACCGGTGACCTCGACACGATCGCGGCCGTCGGCAAGCCGCTGGCGGTGTACGTCGCCGACGGCGAGCGGCTG
CCCAGCGGGGGCCGCGACCTGAACAGCCACAGCACGCAGGTCACCGCGATCACCGCCGACGACACCTCACCGCTGCTGTG
GACGCAGGACACCTCGTCGGCCGACCTGGCCGCCGACCTCCACACACTGCTCGCCGAGGAGGCCGACCGGTGA

Upstream 100 bases:

>100_bases
ATCGTGGGCTCGGCGTTCGTGCGCACGCTCCTCGACCACCCGGACGACCCGGCCGCGGGCCTGCGCGCGCTCCGCGAGCT
GACCGAGGACCTCGCCGCCG

Downstream 100 bases:

>100_bases
CCACCCTGATCGCTCAGGTGAGCGTGCTGTCGATCCCGAGCCCGTCCTCGGGCGTGTGGTACCTCGGCCCGGTGCCGATC
CGCGGCTACGCGCTCGCGAT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSGVRRRLAGIGALVLAGALLAGCSTSTAETDGGYRAAVTHDPYTVSATPLTDTSGQPYSLTKDTDKPVTLVFFGYSSCP
DICQVVMANIASALTRLDEADRSSVDVVFVTTDPKVDTEQHLRAYLDRFDPSFIGLTGDLDTIAAVGKPLAVYVADGERL
PSGGRDLNSHSTQVTAITADDTSPLLWTQDTSSADLAADLHTLLAEEADR

Sequences:

>Translated_210_residues
MSGVRRRLAGIGALVLAGALLAGCSTSTAETDGGYRAAVTHDPYTVSATPLTDTSGQPYSLTKDTDKPVTLVFFGYSSCP
DICQVVMANIASALTRLDEADRSSVDVVFVTTDPKVDTEQHLRAYLDRFDPSFIGLTGDLDTIAAVGKPLAVYVADGERL
PSGGRDLNSHSTQVTAITADDTSPLLWTQDTSSADLAADLHTLLAEEADR
>Mature_209_residues
SGVRRRLAGIGALVLAGALLAGCSTSTAETDGGYRAAVTHDPYTVSATPLTDTSGQPYSLTKDTDKPVTLVFFGYSSCPD
ICQVVMANIASALTRLDEADRSSVDVVFVTTDPKVDTEQHLRAYLDRFDPSFIGLTGDLDTIAAVGKPLAVYVADGERLP
SGGRDLNSHSTQVTAITADDTSPLLWTQDTSSADLAADLHTLLAEEADR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319498, Length=158, Percent_Identity=29.746835443038, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6319511, Length=147, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920710, Length=90, Percent_Identity=32.2222222222222, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22126; Mature: 21995

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVRRRLAGIGALVLAGALLAGCSTSTAETDGGYRAAVTHDPYTVSATPLTDTSGQPYS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEE
LTKDTDKPVTLVFFGYSSCPDICQVVMANIASALTRLDEADRSSVDVVFVTTDPKVDTEQ
ECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
HLRAYLDRFDPSFIGLTGDLDTIAAVGKPLAVYVADGERLPSGGRDLNSHSTQVTAITAD
HHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEC
DTSPLLWTQDTSSADLAADLHTLLAEEADR
CCCCEEEECCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGVRRRLAGIGALVLAGALLAGCSTSTAETDGGYRAAVTHDPYTVSATPLTDTSGQPYS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEE
LTKDTDKPVTLVFFGYSSCPDICQVVMANIASALTRLDEADRSSVDVVFVTTDPKVDTEQ
ECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
HLRAYLDRFDPSFIGLTGDLDTIAAVGKPLAVYVADGERLPSGGRDLNSHSTQVTAITAD
HHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEC
DTSPLLWTQDTSSADLAADLHTLLAEEADR
CCCCEEEECCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA