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The map label for this gene is pdtaR [H]

Identifier: 119717242

GI number: 119717242

Start: 3215009

End: 3215632

Strand: Reverse

Name: pdtaR [H]

Synonym: Noca_3018

Alternate gene names: 119717242

Gene position: 3215632-3215009 (Counterclockwise)

Preceding gene: 119717244

Following gene: 119717241

Centisome position: 64.49

GC content: 72.76

Gene sequence:

>624_bases
GTGACTCAGACCGAGCAGCCGGCCCCGCAGCCCGGCGGCCCCGCACCGCGGCGCGTCGTCATCGCCGAGGACGAGGTGCT
GATCCGGATGGACCTCGCCGAGATGCTGGGCGAGGAGGGGTACGACGTGGTCGGCCAGGCCGGCGACGGTGCCACCGCGG
TCCGGCTCGCCGAGGAGCTGCGCCCCGACCTGGTCATCCTCGACGTGAAGATGCCGGTTCTGGACGGGATCGCCGCCGCC
GAGCGGATCGCCGAGGCCCGGATCGCGCCGGTCGTGATCCTGACCGCCTTCTCGCAGCGTGAGCTCGTCGAGCGGGCCCG
GGACGCCGGGGCGATGGCGTACCTGGTCAAGCCGTTCTCCCGGTCCGACCTGGTGCCGGCGATCGAGATGGCGGTCAGCC
GGTTCGCCGAGCTCGCCCTCCTGGAGGCCGAGGTCGCCGACCTCACCGAGCGCCTCGAGACCCGCAAGGCCGTCGACCGG
GCCAAGGGCGTCCTGCAGGAGCAGCTGCACCTCTCCGAGCCCGACGCCTTCCGGTGGATCCAGAAGACCGCCATGGACCT
GCGGCTCTCGATGCGCCAGGTCGCCGACGGAGTGATCACGCACGGTCCCGGACTGGCCGGCTGA

Upstream 100 bases:

>100_bases
GAGACCGCTTCCTCTGCCGGTTGGGATACCGGGGCGCGCGCAGAACCCTATCCGAGGGACGGCTGTGCTGGCCGCGCCGG
GAGCCGGATAACCTGCTGCC

Downstream 100 bases:

>100_bases
CCGGTCCAGCCCACCGGCGTGTGACGGAAGCCATCTACTTTTCTAGATCACGAATTGGCAACGACAGGGCACAAAGTCCT
GCTCAGCCCACTCTGGTCCC

Product: response regulator receiver

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTQTEQPAPQPGGPAPRRVVIAEDEVLIRMDLAEMLGEEGYDVVGQAGDGATAVRLAEELRPDLVILDVKMPVLDGIAAA
ERIAEARIAPVVILTAFSQRELVERARDAGAMAYLVKPFSRSDLVPAIEMAVSRFAELALLEAEVADLTERLETRKAVDR
AKGVLQEQLHLSEPDAFRWIQKTAMDLRLSMRQVADGVITHGPGLAG

Sequences:

>Translated_207_residues
MTQTEQPAPQPGGPAPRRVVIAEDEVLIRMDLAEMLGEEGYDVVGQAGDGATAVRLAEELRPDLVILDVKMPVLDGIAAA
ERIAEARIAPVVILTAFSQRELVERARDAGAMAYLVKPFSRSDLVPAIEMAVSRFAELALLEAEVADLTERLETRKAVDR
AKGVLQEQLHLSEPDAFRWIQKTAMDLRLSMRQVADGVITHGPGLAG
>Mature_206_residues
TQTEQPAPQPGGPAPRRVVIAEDEVLIRMDLAEMLGEEGYDVVGQAGDGATAVRLAEELRPDLVILDVKMPVLDGIAAAE
RIAEARIAPVVILTAFSQRELVERARDAGAMAYLVKPFSRSDLVPAIEMAVSRFAELALLEAEVADLTERLETRKAVDRA
KGVLQEQLHLSEPDAFRWIQKTAMDLRLSMRQVADGVITHGPGLAG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=142, Percent_Identity=32.3943661971831, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786599, Length=129, Percent_Identity=35.6589147286822, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22458; Mature: 22327

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTEQPAPQPGGPAPRRVVIAEDEVLIRMDLAEMLGEEGYDVVGQAGDGATAVRLAEEL
CCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC
RPDLVILDVKMPVLDGIAAAERIAEARIAPVVILTAFSQRELVERARDAGAMAYLVKPFS
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCEEEECCCC
RSDLVPAIEMAVSRFAELALLEAEVADLTERLETRKAVDRAKGVLQEQLHLSEPDAFRWI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QKTAMDLRLSMRQVADGVITHGPGLAG
HHHHHHHHHHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure 
TQTEQPAPQPGGPAPRRVVIAEDEVLIRMDLAEMLGEEGYDVVGQAGDGATAVRLAEEL
CCCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC
RPDLVILDVKMPVLDGIAAAERIAEARIAPVVILTAFSQRELVERARDAGAMAYLVKPFS
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCEEEECCCC
RSDLVPAIEMAVSRFAELALLEAEVADLTERLETRKAVDRAKGVLQEQLHLSEPDAFRWI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QKTAMDLRLSMRQVADGVITHGPGLAG
HHHHHHHHHHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]