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The map label for this gene is csd [H]

Identifier: 119716920

GI number: 119716920

Start: 2861796

End: 2863508

Strand: Reverse

Name: csd [H]

Synonym: Noca_2695

Alternate gene names: 119716920

Gene position: 2863508-2861796 (Counterclockwise)

Preceding gene: 119716921

Following gene: 119716919

Centisome position: 57.43

GC content: 72.39

Gene sequence:

>1713_bases
ATGCCTGACCGGGAGGCCCTCCTCGGGCTGATCCGCGACTCGGTGATCGGCGAGGACCACCTGATGGAGACGCCGTACGG
GAGTCGCCGGGTCACCTACGCCGACTACACCGCGTCCGGGCGGGCCCTCACCTTCATCGAGGACTTCATCCGCGACCAGG
TGCTGCCCGGCTACGCCAACACGCACACCGAGTCCAGCGGCACCGGCCTGCAGACCACCCGCCTGCGCGAGGAGGCCCGC
GAGATCATCCGTGCGGCCGTCGGCGGCGACCAGGACACCGTCGTGCTCTTCGCCGGCTCCGGGTCGACCGGCGCGATCGC
CAAGCTGATCGGCGTCCTCGGCCTGCGGATCCCCTCCGCGCTCGAGGACGCCTACGGGCTCGCCGAGCACATCCCCGCCG
ACCGGCGGCCGGTGGTCTTCATCGGCCCGTACGAGCACCACTCGAACGAGATCCCGTGGCGCGAGTCCATCGCCGACGTC
GTCACGATCCGCCAGGACGGCGACGGCGGTGTCGACCGGGACGACCTGCGCGCCCAGCTGGCGGCGTACGCCGGACGGCC
GCTGAAGATCGGGTCCTTCTCGGCCGCCTCGAACGTGACCGGCATCGTGTCGGACACGGCCGCGATCGCCGAGCTGCTCC
ACGAGCACGGCGCGCTGAGCCTGTGGGACTTCGCCGCGGCGGCGCCGTACATCGAGATCGAGATGGGGGCGCAGCCGGAC
CGGCCGCTGTCCTACAAGGACGCGGTGTTCATCTCGCCGCACAAGTTCATCGGCGGGCCGGCGACGCCCGGCGTGCTGGT
CGCGCGGCGCGAGCTGTTCGCCAACCGCGTTCCGGACGTGCCCGGCGGGGGCACCGTCGCGTATGTCAACGACGACGACC
ACCGCTACCTGACCGACCCGACCCAGCGCGAGGAGGGCGGGACCCCGGCGATCATCGAGGCGATCCGCGCCGGCCTGGTC
TTCCAGCTCAAGGAGGCCGTCGGGACCGCGACGATCCGGGCCCAGGAGGAGCGGCACCTGCGCAGGGCCGTGGCGGCGTG
GCGGGAGGAGCCGGCCCTGGAGCTGCTCGGCAACCTCGAGGCCGAGCGGCTCTCGATCGTCTCCTTCGTCGTGCGCTCGC
CGTCCGGGCGCTACCTGCACCACAACTACGTGGTCGCGCTGCTCAACGACCTGTTCGGCATCCAGTCGCGGGGCGGCTGC
TCGTGCGCCGGCCCCTACGGGCACCGGCTGCTCGGCATCGACCTCGAGCGCTCCCACGAGTTCGAGCGCGAGATCGCCGG
CGGCTGCGAGGGGATCAAGCCCGGTTGGGTGCGCGTCAACTTCAACTACTTCGTCTCCGACGCGGTCGTCGACTACCTCA
TCGAGGCGGTCCGGCTGGTCGCCCGCGACGGGTGGCGGCTGCTCGACGACTATCGCTTCGACCCCGCCAGCGGGCGCTGG
CGGCACCGGGCGGGCCTGGTCAGCCCGCCGCTCAGCCTCCGCGACGTCGCCTACGAGGGCGGGCGGGTGTCGATGCCCAG
CAACGACGCCACCGGGGGAGAGGAGCTGCTCGCCGAGCACCTGCGCGAGGGCGTCGCGATCCTGGCTTCCGCGACCGGCC
CGGACCTGGCCACCCATCCCGCCAACCTCAGCGCGGACTTCGAGCACCTCCGGTGGTTCGAGCTGCCCGAGTCGGCGCTT
GCGCCGGCTCGGCCCAGCAGCCAGGTCGAGTAG

Upstream 100 bases:

>100_bases
CGACGGCGTCGTCGCCGGGAGCAAGTCCGTGCAGCTCGTGGTGCGGTAGCCCTGCGAGAGGGCCTCCCGGGTGGGAGCAT
GACCGACATGGTGGTCGTGC

Downstream 100 bases:

>100_bases
TCGCGCGACCGACGAAGGAGGTCCCGACCGGCGTATCGCGCCGCCGTCCGGACCGTCCGAGTAGGGGTCGGACTCACACG
TAACCGACGCGGCGACGCCC

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MPDREALLGLIRDSVIGEDHLMETPYGSRRVTYADYTASGRALTFIEDFIRDQVLPGYANTHTESSGTGLQTTRLREEAR
EIIRAAVGGDQDTVVLFAGSGSTGAIAKLIGVLGLRIPSALEDAYGLAEHIPADRRPVVFIGPYEHHSNEIPWRESIADV
VTIRQDGDGGVDRDDLRAQLAAYAGRPLKIGSFSAASNVTGIVSDTAAIAELLHEHGALSLWDFAAAAPYIEIEMGAQPD
RPLSYKDAVFISPHKFIGGPATPGVLVARRELFANRVPDVPGGGTVAYVNDDDHRYLTDPTQREEGGTPAIIEAIRAGLV
FQLKEAVGTATIRAQEERHLRRAVAAWREEPALELLGNLEAERLSIVSFVVRSPSGRYLHHNYVVALLNDLFGIQSRGGC
SCAGPYGHRLLGIDLERSHEFEREIAGGCEGIKPGWVRVNFNYFVSDAVVDYLIEAVRLVARDGWRLLDDYRFDPASGRW
RHRAGLVSPPLSLRDVAYEGGRVSMPSNDATGGEELLAEHLREGVAILASATGPDLATHPANLSADFEHLRWFELPESAL
APARPSSQVE

Sequences:

>Translated_570_residues
MPDREALLGLIRDSVIGEDHLMETPYGSRRVTYADYTASGRALTFIEDFIRDQVLPGYANTHTESSGTGLQTTRLREEAR
EIIRAAVGGDQDTVVLFAGSGSTGAIAKLIGVLGLRIPSALEDAYGLAEHIPADRRPVVFIGPYEHHSNEIPWRESIADV
VTIRQDGDGGVDRDDLRAQLAAYAGRPLKIGSFSAASNVTGIVSDTAAIAELLHEHGALSLWDFAAAAPYIEIEMGAQPD
RPLSYKDAVFISPHKFIGGPATPGVLVARRELFANRVPDVPGGGTVAYVNDDDHRYLTDPTQREEGGTPAIIEAIRAGLV
FQLKEAVGTATIRAQEERHLRRAVAAWREEPALELLGNLEAERLSIVSFVVRSPSGRYLHHNYVVALLNDLFGIQSRGGC
SCAGPYGHRLLGIDLERSHEFEREIAGGCEGIKPGWVRVNFNYFVSDAVVDYLIEAVRLVARDGWRLLDDYRFDPASGRW
RHRAGLVSPPLSLRDVAYEGGRVSMPSNDATGGEELLAEHLREGVAILASATGPDLATHPANLSADFEHLRWFELPESAL
APARPSSQVE
>Mature_569_residues
PDREALLGLIRDSVIGEDHLMETPYGSRRVTYADYTASGRALTFIEDFIRDQVLPGYANTHTESSGTGLQTTRLREEARE
IIRAAVGGDQDTVVLFAGSGSTGAIAKLIGVLGLRIPSALEDAYGLAEHIPADRRPVVFIGPYEHHSNEIPWRESIADVV
TIRQDGDGGVDRDDLRAQLAAYAGRPLKIGSFSAASNVTGIVSDTAAIAELLHEHGALSLWDFAAAAPYIEIEMGAQPDR
PLSYKDAVFISPHKFIGGPATPGVLVARRELFANRVPDVPGGGTVAYVNDDDHRYLTDPTQREEGGTPAIIEAIRAGLVF
QLKEAVGTATIRAQEERHLRRAVAAWREEPALELLGNLEAERLSIVSFVVRSPSGRYLHHNYVVALLNDLFGIQSRGGCS
CAGPYGHRLLGIDLERSHEFEREIAGGCEGIKPGWVRVNFNYFVSDAVVDYLIEAVRLVARDGWRLLDDYRFDPASGRWR
HRAGLVSPPLSLRDVAYEGGRVSMPSNDATGGEELLAEHLREGVAILASATGPDLATHPANLSADFEHLRWFELPESALA
PARPSSQVE

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=271, Percent_Identity=26.9372693726937, Blast_Score=75, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI193211090, Length=592, Percent_Identity=35.8108108108108, Blast_Score=333, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 62012; Mature: 61881

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDREALLGLIRDSVIGEDHLMETPYGSRRVTYADYTASGRALTFIEDFIRDQVLPGYAN
CCCHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
THTESSGTGLQTTRLREEAREIIRAAVGGDQDTVVLFAGSGSTGAIAKLIGVLGLRIPSA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHH
LEDAYGLAEHIPADRRPVVFIGPYEHHSNEIPWRESIADVVTIRQDGDGGVDRDDLRAQL
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHEEEEEECCCCCCCHHHHHHHH
AAYAGRPLKIGSFSAASNVTGIVSDTAAIAELLHEHGALSLWDFAAAAPYIEIEMGAQPD
HHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCEEEEEECCCCC
RPLSYKDAVFISPHKFIGGPATPGVLVARRELFANRVPDVPGGGTVAYVNDDDHRYLTDP
CCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECCC
TQREEGGTPAIIEAIRAGLVFQLKEAVGTATIRAQEERHLRRAVAAWREEPALELLGNLE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
AERLSIVSFVVRSPSGRYLHHNYVVALLNDLFGIQSRGGCSCAGPYGHRLLGIDLERSHE
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHH
FEREIAGGCEGIKPGWVRVNFNYFVSDAVVDYLIEAVRLVARDGWRLLDDYRFDPASGRW
HHHHHHCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCC
RHRAGLVSPPLSLRDVAYEGGRVSMPSNDATGGEELLAEHLREGVAILASATGPDLATHP
HHCCCCCCCCCCHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCC
ANLSADFEHLRWFELPESALAPARPSSQVE
CCCCCCHHHHEEECCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
PDREALLGLIRDSVIGEDHLMETPYGSRRVTYADYTASGRALTFIEDFIRDQVLPGYAN
CCHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
THTESSGTGLQTTRLREEAREIIRAAVGGDQDTVVLFAGSGSTGAIAKLIGVLGLRIPSA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHH
LEDAYGLAEHIPADRRPVVFIGPYEHHSNEIPWRESIADVVTIRQDGDGGVDRDDLRAQL
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHEEEEEECCCCCCCHHHHHHHH
AAYAGRPLKIGSFSAASNVTGIVSDTAAIAELLHEHGALSLWDFAAAAPYIEIEMGAQPD
HHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCEEEEEECCCCC
RPLSYKDAVFISPHKFIGGPATPGVLVARRELFANRVPDVPGGGTVAYVNDDDHRYLTDP
CCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECCC
TQREEGGTPAIIEAIRAGLVFQLKEAVGTATIRAQEERHLRRAVAAWREEPALELLGNLE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
AERLSIVSFVVRSPSGRYLHHNYVVALLNDLFGIQSRGGCSCAGPYGHRLLGIDLERSHE
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHH
FEREIAGGCEGIKPGWVRVNFNYFVSDAVVDYLIEAVRLVARDGWRLLDDYRFDPASGRW
HHHHHHCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCC
RHRAGLVSPPLSLRDVAYEGGRVSMPSNDATGGEELLAEHLREGVAILASATGPDLATHP
HHCCCCCCCCCCHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCC
ANLSADFEHLRWFELPESALAPARPSSQVE
CCCCCCHHHHEEECCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA