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The map label for this gene is alsR [H]

Identifier: 119716836

GI number: 119716836

Start: 2777881

End: 2778474

Strand: Reverse

Name: alsR [H]

Synonym: Noca_2610

Alternate gene names: 119716836

Gene position: 2778474-2777881 (Counterclockwise)

Preceding gene: 119716837

Following gene: 119716835

Centisome position: 55.73

GC content: 72.56

Gene sequence:

>594_bases
GTGAGCGAGGCGTTCGGGCACTTCCGGGTCGGGTTCGTGACGGGTGCCACGCCGGACAAGTGGGCGCGGACCTGGCGGTC
GCGCTACTCCCGAGACCCCCTCGAGCTGGTGCCGCTGGACGAGGAGGAGCAGGAGGCACGGCTGCGCGCGGGCACCCTCG
ACATGGCCCTCGTGCGGCTGCCGATCGACCGTGACGGGCTGCACTGCATCCCCCTGTACGACGAGCTCCCGGTCGCGGTG
ATGGGCGTCGAGCACGCCCTGAGCCTCGCGGAGGAGGTCACCACGGCCGACCTGGCCGACGAGCAGCTCGTGCTCCCCCA
TCACTCGGGCTGGACCCCGCAGGTCGAGCAGCTCGCGTGGCCGCCGATGACGGCCAAGGACGCCGTCGAGGTCGTCGCCG
CCGGCACCGGGGTGGCGATCCTGCCCATGTCCATCGCCCGCCTGTACCACCGCAAGGACGCCACCTACCGCGTCGTCACC
GACCTGGCGCCGACGACCGTGGGCCTGGCGTGGCTGGTCGAGAACGACGACCCGTGGGTTCAGCGGTTCATCGGGATCGT
GCGCGGCCGGACGGAGCGCAGCTCCCGGGGGTGA

Upstream 100 bases:

>100_bases
AGCCGGGAGCGACCAGGGTCCGTCGTTGGTGACCAAACGACACGGGGTTCCGAGCCACGGGGACCGCCCCGGGTCGCGGG
GACGGCCGTAGGGTGAGCGG

Downstream 100 bases:

>100_bases
CCGGGCTCACCGTTTCGGGGTCGGGCACCGGTGGTACCGGAAGCCGATGACCACTCGCTACGACCACCCCCGTGCCCACC
GAGTGGCGGACGCCGTACGC

Product: substrate-binding protein LysR

Products: NA

Alternate protein names: Als operon regulatory protein [H]

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSEAFGHFRVGFVTGATPDKWARTWRSRYSRDPLELVPLDEEEQEARLRAGTLDMALVRLPIDRDGLHCIPLYDELPVAV
MGVEHALSLAEEVTTADLADEQLVLPHHSGWTPQVEQLAWPPMTAKDAVEVVAAGTGVAILPMSIARLYHRKDATYRVVT
DLAPTTVGLAWLVENDDPWVQRFIGIVRGRTERSSRG

Sequences:

>Translated_197_residues
MSEAFGHFRVGFVTGATPDKWARTWRSRYSRDPLELVPLDEEEQEARLRAGTLDMALVRLPIDRDGLHCIPLYDELPVAV
MGVEHALSLAEEVTTADLADEQLVLPHHSGWTPQVEQLAWPPMTAKDAVEVVAAGTGVAILPMSIARLYHRKDATYRVVT
DLAPTTVGLAWLVENDDPWVQRFIGIVRGRTERSSRG
>Mature_196_residues
SEAFGHFRVGFVTGATPDKWARTWRSRYSRDPLELVPLDEEEQEARLRAGTLDMALVRLPIDRDGLHCIPLYDELPVAVM
GVEHALSLAEEVTTADLADEQLVLPHHSGWTPQVEQLAWPPMTAKDAVEVVAAGTGVAILPMSIARLYHRKDATYRVVTD
LAPTTVGLAWLVENDDPWVQRFIGIVRGRTERSSRG

Specific function: Regulates the expression of the alsSD operon for acetoin biosynthesis [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 21948; Mature: 21817

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAFGHFRVGFVTGATPDKWARTWRSRYSRDPLELVPLDEEEQEARLRAGTLDMALVRL
CCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCEEEEEEE
PIDRDGLHCIPLYDELPVAVMGVEHALSLAEEVTTADLADEQLVLPHHSGWTPQVEQLAW
CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCC
PPMTAKDAVEVVAAGTGVAILPMSIARLYHRKDATYRVVTDLAPTTVGLAWLVENDDPWV
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCHHH
QRFIGIVRGRTERSSRG
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SEAFGHFRVGFVTGATPDKWARTWRSRYSRDPLELVPLDEEEQEARLRAGTLDMALVRL
CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCEEEEEEE
PIDRDGLHCIPLYDELPVAVMGVEHALSLAEEVTTADLADEQLVLPHHSGWTPQVEQLAW
CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCC
PPMTAKDAVEVVAAGTGVAILPMSIARLYHRKDATYRVVTDLAPTTVGLAWLVENDDPWV
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCHHH
QRFIGIVRGRTERSSRG
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7685336; 9353933; 9384377 [H]