Click here to switch to the map view.

The map label for this gene is ybcL [C]

Identifier: 119716825

GI number: 119716825

Start: 2764993

End: 2765520

Strand: Reverse

Name: ybcL [C]

Synonym: Noca_2599

Alternate gene names: 119716825

Gene position: 2765520-2764993 (Counterclockwise)

Preceding gene: 119716828

Following gene: 119716822

Centisome position: 55.47

GC content: 72.54

Gene sequence:

>528_bases
ATGAGCCTCGACCGGCCCGTCAGTCCGAACCCGTACGACCTGCTGCCCGCCGTCCCCTCGTTCACGGTGACCAGTGCGGA
CGTCACCGACGGCCGGCCGCTGAAGGACGACCAGGTCGCCGCGGCGGGCAACACCTCGCCCCAGCTGTCCTGGGAGGGCG
CCCCGGAGGGCACCAAGAGCTACACCGTCACCTGCTTCGACCCGGACGCGCCGACGCCGAGCGGCTTCTGGCACTGGGTG
CTGGTCGACCTTCCCGCCGAGGTGACCTCGCTCGACGCCGGGGCGGGCGCCGAGGGCGCGACCCTCCCGGGCGGGGCCTT
CATGTGCCGCAACGACGGCGGCCCGAAGGCGTTCATGGGGGCGGCTCCCCCGCAGGGCGACCAGGTGCACCGCTACTTCT
TCGTGGTGCACGCCGTGCAGGAGGACTCGCTCGGCGTCGACTCCGACGCCTCGCCCGCGGTGGTCTCGTTCAACCTCGCG
TTCAAGACCGCGGGCCGGGCCATCCTGCACGGCACGTACCAGCACTGA

Upstream 100 bases:

>100_bases
GGACATCATCGCGGCCCCGGCCGCTGCGGCTGTGGCGCGCGTTCAGCCACCGGACTACGTTGAAGTGGTCCCGCACCCTG
AGCTACCAGGTAGGAGCGTC

Downstream 100 bases:

>100_bases
GCGTCGGGGCGGGTCACGGGCGTACGCCGCGCCCTCAGGCGCCGCGCAGCAGCTCCTCGAAGGGCGTCGGGTCTGCGAAC
TCGTCCTCGATCGTCCGCGC

Product: PBP family phospholipid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSLDRPVSPNPYDLLPAVPSFTVTSADVTDGRPLKDDQVAAAGNTSPQLSWEGAPEGTKSYTVTCFDPDAPTPSGFWHWV
LVDLPAEVTSLDAGAGAEGATLPGGAFMCRNDGGPKAFMGAAPPQGDQVHRYFFVVHAVQEDSLGVDSDASPAVVSFNLA
FKTAGRAILHGTYQH

Sequences:

>Translated_175_residues
MSLDRPVSPNPYDLLPAVPSFTVTSADVTDGRPLKDDQVAAAGNTSPQLSWEGAPEGTKSYTVTCFDPDAPTPSGFWHWV
LVDLPAEVTSLDAGAGAEGATLPGGAFMCRNDGGPKAFMGAAPPQGDQVHRYFFVVHAVQEDSLGVDSDASPAVVSFNLA
FKTAGRAILHGTYQH
>Mature_174_residues
SLDRPVSPNPYDLLPAVPSFTVTSADVTDGRPLKDDQVAAAGNTSPQLSWEGAPEGTKSYTVTCFDPDAPTPSGFWHWVL
VDLPAEVTSLDAGAGAEGATLPGGAFMCRNDGGPKAFMGAAPPQGDQVHRYFFVVHAVQEDSLGVDSDASPAVVSFNLAF
KTAGRAILHGTYQH

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=146, Percent_Identity=47.945205479452, Blast_Score=131, Evalue=2e-32,
Organism=Escherichia coli, GI1786990, Length=152, Percent_Identity=43.421052631579, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 18317; Mature: 18186

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDRPVSPNPYDLLPAVPSFTVTSADVTDGRPLKDDQVAAAGNTSPQLSWEGAPEGTKS
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCE
YTVTCFDPDAPTPSGFWHWVLVDLPAEVTSLDAGAGAEGATLPGGAFMCRNDGGPKAFMG
EEEEEECCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEC
AAPPQGDQVHRYFFVVHAVQEDSLGVDSDASPAVVSFNLAFKTAGRAILHGTYQH
CCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCC
>Mature Secondary Structure 
SLDRPVSPNPYDLLPAVPSFTVTSADVTDGRPLKDDQVAAAGNTSPQLSWEGAPEGTKS
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCE
YTVTCFDPDAPTPSGFWHWVLVDLPAEVTSLDAGAGAEGATLPGGAFMCRNDGGPKAFMG
EEEEEECCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEC
AAPPQGDQVHRYFFVVHAVQEDSLGVDSDASPAVVSFNLAFKTAGRAILHGTYQH
CCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]