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The map label for this gene is xylA [H]

Identifier: 119716602

GI number: 119716602

Start: 2530430

End: 2531593

Strand: Reverse

Name: xylA [H]

Synonym: Noca_2375

Alternate gene names: 119716602

Gene position: 2531593-2530430 (Counterclockwise)

Preceding gene: 119716611

Following gene: 119716598

Centisome position: 50.78

GC content: 70.02

Gene sequence:

>1164_bases
ATGACCGAGTCGAGCTTCAGCCCCACGCGCGACGACCACTTCACCTTCGGCCTGTGGACCGTGGGGTGGCAGGGCGTCGA
CGTCTTCGGCACCGCGATCCGCCCGGTCCTCGAGCCGGCCGAGGCGATCCACCGGCTCAGCGACCTCGGCGCGTACGGCG
TGACGTTCCACGACAACGACGTGTTCCCCTTCGACGCGGACGCCACCACCAAGGAGCAGCACCTCGCACCGTTCCGCAAG
GCGCTCGAGGAGACCGGCCTGGTGGTCCCCATGGTCACCACGAACCTGTTCTCCCACCCGGTGTTCCGCGACGGCGGCTT
CACCAACAACCACCGCGACGTACGCCGGTTCGCGATCCGCAAGGCCGCCGACCAGATCGATCTGGCCGCCGAGCTCGGCG
CCAAGATCTTCGTCGCCTGGGGCGGCCGCGAGGGAGCCGAGTCGGGGGCGGCGAAGGACATCAAGTCGGCGCTGTCGCGC
TACAAGGAGGCCTTCGACCTGCTCGGCGCCTACGTGCTGGAGCAGGGCTACGACCTGCGCTTCGCGATCGAGCCCAAGCC
CAACGAGCCGCGCGGCGACATCCTGCTGCCGACCGTCGGCCACGCCCTGGCGTTCATCAACGAGCTCGAGCACCCCGAGC
TGGTCGGCCTCAACCCCGAGGTCGGGCACGAGGAGATGGCGTCCCTGAACTACGCGCACGGCCTGGCCCAGGCGCTGTGG
CACGGCAAGCTCTTCCACATCGACCTCAACGGCCAGCACGGCCCCCGCTACGACCAGGACCTCCGCTTCGGCGCCGGCAA
CGCACGCGGCGCGTTCTGGACCGTCGACATCGTCGAGAACGGCGGCTACGAGGGCCCGCGGCACTTCGACTACAAGCCAC
CGCGCACCGAGGACATGGACGGTGTCTGGGTCTCCGCCGAGGCGTGCATGCGCAACTACCTGATCCTGCGCGAGAAGGTA
CGTGCCTTCCGCGCCGACCCCGAGGTGCAGCAGGCCCTGAAGGACGCCCGGGTCGACCAGCTCGCGGTCCCGACCGTGGC
CGCCGGCGAGTCGCTCGCCGACCTGCGCGCCGAGGCGTTCGATCCCGACCAGGCCGCCCAGCGTGGCATGGGCTTCGAGA
AGCTCGACCAGCTCGCCCTGGAGCACCTGTACGGCGTGCGCTGA

Upstream 100 bases:

>100_bases
TGGTCGCCAACATATCCGGGTCCCATGGCCCTACCCCGCCCGTGGCCGCACCGGTTCCGTTGCTCCATCCACCCGTACTC
ACCCGGAGGCACCAGGCACC

Downstream 100 bases:

>100_bases
GCTCGCCGCGCGGCCGGGCTCAGCTCAGACCAGCTCGGGAAGGTGCAGGTGCGCCAGCACCAGGTCGAACTCGGCCACGT
CCATCACGTCGACGCCCGAC

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MTESSFSPTRDDHFTFGLWTVGWQGVDVFGTAIRPVLEPAEAIHRLSDLGAYGVTFHDNDVFPFDADATTKEQHLAPFRK
ALEETGLVVPMVTTNLFSHPVFRDGGFTNNHRDVRRFAIRKAADQIDLAAELGAKIFVAWGGREGAESGAAKDIKSALSR
YKEAFDLLGAYVLEQGYDLRFAIEPKPNEPRGDILLPTVGHALAFINELEHPELVGLNPEVGHEEMASLNYAHGLAQALW
HGKLFHIDLNGQHGPRYDQDLRFGAGNARGAFWTVDIVENGGYEGPRHFDYKPPRTEDMDGVWVSAEACMRNYLILREKV
RAFRADPEVQQALKDARVDQLAVPTVAAGESLADLRAEAFDPDQAAQRGMGFEKLDQLALEHLYGVR

Sequences:

>Translated_387_residues
MTESSFSPTRDDHFTFGLWTVGWQGVDVFGTAIRPVLEPAEAIHRLSDLGAYGVTFHDNDVFPFDADATTKEQHLAPFRK
ALEETGLVVPMVTTNLFSHPVFRDGGFTNNHRDVRRFAIRKAADQIDLAAELGAKIFVAWGGREGAESGAAKDIKSALSR
YKEAFDLLGAYVLEQGYDLRFAIEPKPNEPRGDILLPTVGHALAFINELEHPELVGLNPEVGHEEMASLNYAHGLAQALW
HGKLFHIDLNGQHGPRYDQDLRFGAGNARGAFWTVDIVENGGYEGPRHFDYKPPRTEDMDGVWVSAEACMRNYLILREKV
RAFRADPEVQQALKDARVDQLAVPTVAAGESLADLRAEAFDPDQAAQRGMGFEKLDQLALEHLYGVR
>Mature_386_residues
TESSFSPTRDDHFTFGLWTVGWQGVDVFGTAIRPVLEPAEAIHRLSDLGAYGVTFHDNDVFPFDADATTKEQHLAPFRKA
LEETGLVVPMVTTNLFSHPVFRDGGFTNNHRDVRRFAIRKAADQIDLAAELGAKIFVAWGGREGAESGAAKDIKSALSRY
KEAFDLLGAYVLEQGYDLRFAIEPKPNEPRGDILLPTVGHALAFINELEHPELVGLNPEVGHEEMASLNYAHGLAQALWH
GKLFHIDLNGQHGPRYDQDLRFGAGNARGAFWTVDIVENGGYEGPRHFDYKPPRTEDMDGVWVSAEACMRNYLILREKVR
AFRADPEVQQALKDARVDQLAVPTVAAGESLADLRAEAFDPDQAAQRGMGFEKLDQLALEHLYGVR

Specific function: Involved in D-xylose catabolism [H]

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=307, Percent_Identity=26.7100977198697, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013453
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 42966; Mature: 42834

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESSFSPTRDDHFTFGLWTVGWQGVDVFGTAIRPVLEPAEAIHRLSDLGAYGVTFHDND
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
VFPFDADATTKEQHLAPFRKALEETGLVVPMVTTNLFSHPVFRDGGFTNNHRDVRRFAIR
CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
KAADQIDLAAELGAKIFVAWGGREGAESGAAKDIKSALSRYKEAFDLLGAYVLEQGYDLR
HHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FAIEPKPNEPRGDILLPTVGHALAFINELEHPELVGLNPEVGHEEMASLNYAHGLAQALW
EEECCCCCCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
HGKLFHIDLNGQHGPRYDQDLRFGAGNARGAFWTVDIVENGGYEGPRHFDYKPPRTEDMD
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
GVWVSAEACMRNYLILREKVRAFRADPEVQQALKDARVDQLAVPTVAAGESLADLRAEAF
CEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCHHCCCHHHHHHHHCC
DPDQAAQRGMGFEKLDQLALEHLYGVR
CHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TESSFSPTRDDHFTFGLWTVGWQGVDVFGTAIRPVLEPAEAIHRLSDLGAYGVTFHDND
CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
VFPFDADATTKEQHLAPFRKALEETGLVVPMVTTNLFSHPVFRDGGFTNNHRDVRRFAIR
CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
KAADQIDLAAELGAKIFVAWGGREGAESGAAKDIKSALSRYKEAFDLLGAYVLEQGYDLR
HHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FAIEPKPNEPRGDILLPTVGHALAFINELEHPELVGLNPEVGHEEMASLNYAHGLAQALW
EEECCCCCCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
HGKLFHIDLNGQHGPRYDQDLRFGAGNARGAFWTVDIVENGGYEGPRHFDYKPPRTEDMD
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
GVWVSAEACMRNYLILREKVRAFRADPEVQQALKDARVDQLAVPTVAAGESLADLRAEAF
CEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCHHCCCHHHHHHHHCC
DPDQAAQRGMGFEKLDQLALEHLYGVR
CHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2651156; 2085424 [H]